Pairwise Alignments

Query, 500 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

Subject, 473 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

 Score =  304 bits (778), Expect = 5e-87
 Identities = 187/495 (37%), Positives = 292/495 (58%), Gaps = 27/495 (5%)

Query: 1   MREVKFRWIDQYLIHMTLKTKFTILAIIPIITLMGLSYILYGQFNSQIKQSHQQSALADA 60
           MREV+FR ID+  I M++  K  ++ ++ +  +  ++ + Y    + I+Q   QS LA  
Sbjct: 1   MREVQFRTIDRVFIRMSINDKMWVIFLLFLSAITTIAGMRYWHTLASIEQ---QSQLAVE 57

Query: 61  QKMVELIDLSLKYVPDDKAASFKQELVSAGFADTQSSLNAKTSRLVHAGGGTLMQGDSLT 120
            K+  L++      PD    S  +  V    +DT  S    T+    A G      +S+ 
Sbjct: 58  YKLQGLLNH-----PDPSQLSVLK--VQNRVSDTIYSQGVVTASATSANGQAYAYTESMK 110

Query: 121 AHSRASSANLVAKTEVTDLDQVLSSAQSVVIISLVALIFVILLSSYYISTFVGGALYTNV 180
            + + +             +Q L   +S ++  L A+ F I   +Y+++TF+GGAL+   
Sbjct: 111 QYEQPAR------------EQAL---RSFLLTYLWAIPFAIF--TYWVATFIGGALWVLY 153

Query: 181 MALKRAADGDLTGRLNFFEVKDEFSILAVSIDTLVERQHQLVSRMTQASSQIRTVVQAFR 240
              ++ A+GDLT RL F   +DEF  +  ++D  ++   +L+  + Q S+ +R     F 
Sbjct: 154 TTTQKIAEGDLTSRLGFHPGRDEFGTIGCALDKAMDTLAELIVAVKQNSATLRDTAMTFA 213

Query: 241 QTAQEGQTLAAEQRQHLDSLATAMEEMTAAVKEVARNAEQSSNETQEANQQVEAGSKDIA 300
              +E +     Q   LDS+ATAMEEMTA+  EV+  +++++ +T++  +QVE   + + 
Sbjct: 214 HEVKESEVQIQNQYSSLDSVATAMEEMTASAAEVSTTSQRATEQTEQDTKQVERSQQRVR 273

Query: 301 ITVQAIGDLANEIGDASTAVNTLNDNAAKIDEVVTTINAISEQTNLLALNAAIEAARAGE 360
             +Q I  L+  I  AS++V TLN NA +I+ V+TTINAISEQTNLLALNAAIEAARAGE
Sbjct: 274 KAIQDIEQLSRYIAQASSSVETLNTNATQINAVITTINAISEQTNLLALNAAIEAARAGE 333

Query: 361 QGRGFAVVADEVRTLAGRTQAATVEIKSMIEALQTGSHALTQVMKRTVEKAQDGKQHVLE 420
           QGRGFAVVADEVRTLA RTQ+ATVEI++MIE LQ  S  + ++ ++TV +A    Q V E
Sbjct: 334 QGRGFAVVADEVRTLASRTQSATVEIQAMIEKLQVESQNIAKLTEQTVSQAHTSSQLVSE 393

Query: 421 TGEDLKAIAHHSERVYEMSVLIATSAEEQSAVANEIATNLMEIRNQSHDVEQSANQSVSG 480
            G D++AIAH ++ + ++SV I+TSA EQS+VA++I++ L +IR+QS+ + + A Q+  G
Sbjct: 394 VGNDVQAIAHSAQLINDLSVQISTSASEQSSVAHDISSELSDIRSQSNTLRRVAEQTSQG 453

Query: 481 CDELHATAEQLDQLL 495
             E+      L ++L
Sbjct: 454 VSEITQATRNLGEIL 468