Pairwise Alignments

Query, 500 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

Subject, 553 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

 Score =  202 bits (515), Expect = 2e-56
 Identities = 127/358 (35%), Positives = 194/358 (54%), Gaps = 5/358 (1%)

Query: 147 QSVVIISLVALIFVILLSSYYI----STFVGGALYTNVMALKRAADGDLTGRLNFFEVKD 202
           Q +  ++ + L+ VIL+S   I    S      L+ N ++   + D DLT R+  F V  
Sbjct: 197 QGLYTLAGITLLIVILVSVMAIMINRSIMRPLELFDNSISSFASGDADLTARMEKFSVP- 255

Query: 203 EFSILAVSIDTLVERQHQLVSRMTQASSQIRTVVQAFRQTAQEGQTLAAEQRQHLDSLAT 262
           EF  L+ + +  VE    ++ R+ Q   Q+     A  Q A +   LA+ QR+  + +AT
Sbjct: 256 EFHKLSHNFNRFVESLQNIIKRVNQVGQQVVEETNAMSQRATQVDHLASNQREETEQVAT 315

Query: 263 AMEEMTAAVKEVARNAEQSSNETQEANQQVEAGSKDIAITVQAIGDLANEIGDASTAVNT 322
           AM EMT   +E++ NA  ++   ++A          +    +++  LA E+ DAS+ +  
Sbjct: 316 AMTEMTTTAQEISNNANNAAQSAKDAEDNATDVHNIVNAAARSVQALAEEVADASSVIAK 375

Query: 323 LNDNAAKIDEVVTTINAISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLAGRTQAA 382
           L  +   I   +  I  I+EQTNLLALNAAIEAARAGEQGRGFAVVADEVR LA RTQ +
Sbjct: 376 LEGDVNNITSSLAVIQDIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRKLASRTQES 435

Query: 383 TVEIKSMIEALQTGSHALTQVMKRTVEKAQDGKQHVLETGEDLKAIAHHSERVYEMSVLI 442
           T +I +MI+ L+ GS A  + M+ + +++    +      E L+ I      + +M+ LI
Sbjct: 436 TQQIHTMIQQLKAGSDAAVKAMESSQQRSITTVREANAAAEALQKIQASIGTIMDMNALI 495

Query: 443 ATSAEEQSAVANEIATNLMEIRNQSHDVEQSANQSVSGCDELHATAEQLDQLLVGLKV 500
           AT+ EEQS V  EI+  ++ I +QS +    ANQ+  G   L+  A +L +L+   KV
Sbjct: 496 ATATEEQSIVGQEISQRIVVISDQSSESADLANQNRQGSQTLNGRAHELYELVARFKV 553