Pairwise Alignments

Query, 500 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

Subject, 564 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

 Score =  204 bits (519), Expect = 7e-57
 Identities = 126/374 (33%), Positives = 203/374 (54%), Gaps = 6/374 (1%)

Query: 128 ANLVAKTEVTDLDQVLSSAQSVVIISLVALIFVILLSSYYISTFVGGALYT-NVMALKRA 186
           A   A+ E    DQ++S+    + +S+V L+F I+  S  +S  +    +  + +    A
Sbjct: 196 AEFRAQREADLYDQMISA----IGLSVVGLVFTIIAVSVLVSRGIAPLQHVVSSLQAVAA 251

Query: 187 ADGDLTGRLNFFEVKDEFSILAVSIDTLVERQHQLVSRMTQASSQIRTVVQAFRQTAQEG 246
             GDLT R+   E +DE   +A + +  +++ H L++ +  +++ +    Q   Q   + 
Sbjct: 252 GGGDLTARIKV-ESQDEIGDVAKAFNAFMDKLHPLMTDIRASANTVEAAAQELDQQTSQA 310

Query: 247 QTLAAEQRQHLDSLATAMEEMTAAVKEVARNAEQSSNETQEANQQVEAGSKDIAITVQAI 306
                      D +  A+ EM+A  +EVA N   ++   + AN Q+    K++ + +  I
Sbjct: 311 SHKMDGHCLETDKVVAAVTEMSATAREVASNTYSTAQAIESANSQIAVAQKEVNLAIDGI 370

Query: 307 GDLANEIGDASTAVNTLNDNAAKIDEVVTTINAISEQTNLLALNAAIEAARAGEQGRGFA 366
           G+L NE+   S AV  L+  AAKI +V+  I  I+EQTNLLALNAAIEAARAGEQGRGFA
Sbjct: 371 GELVNEVNQTSAAVGDLSQQAAKITQVLKVIGDIAEQTNLLALNAAIEAARAGEQGRGFA 430

Query: 367 VVADEVRTLAGRTQAATVEIKSMIEALQTGSHALTQVMKRTVEKAQDGKQHVLETGEDLK 426
           VVADEVR+LA RTQ +T EI  M+ AL  G     Q M  + E+ +      ++  E L 
Sbjct: 431 VVADEVRSLASRTQNSTKEIGEMLNALHQGVSKAVQSMNISQERGEKTALESVQIKESLA 490

Query: 427 AIAHHSERVYEMSVLIATSAEEQSAVANEIATNLMEIRNQSHDVEQSANQSVSGCDELHA 486
            I+     +++M +  A++AE+QSAVA +I  NL+ I+   +++ +S  Q+ S    L  
Sbjct: 491 GISKAVSLIHDMGIQTASAAEQQSAVAEDINQNLVAIQQIVNELSESFKQTESVSASLSH 550

Query: 487 TAEQLDQLLVGLKV 500
           + +Q+  L+   K+
Sbjct: 551 SGQQMGTLVGHFKL 564