Pairwise Alignments

Query, 557 a.a., long-chain-fatty-acid--CoA ligase (RefSeq) from Shewanella loihica PV-4

Subject, 549 a.a., AMP-binding protein from Methanococcus maripaludis S2

 Score =  237 bits (604), Expect = 1e-66
 Identities = 170/541 (31%), Positives = 273/541 (50%), Gaps = 25/541 (4%)

Query: 27  DLFESSVAKYADQPAFVNMGATL--TYRKLEERSRAFAAYLQNELKLQKGDRVAIMMPNL 84
           + FE    K  D+   V     L  TY++ +ER+   A  L  E+ ++KGD + I   N+
Sbjct: 10  EFFEKQAQKDPDREFLVYPDRNLRFTYKEFDERTDLLAKGLL-EIGIKKGDHIGIWARNV 68

Query: 85  LQYPIALFGILRAGMVVVNVNPLYTPRELKHQLNDSGAKAIVVVSNF--ANTLEQVVEQT 142
             +   +F   + G+V+V VN  Y   EL + +  S  KA+ ++ +F   N LE + E  
Sbjct: 69  PDWLTFMFATAKIGVVLVTVNTAYKSHELAYVMKQSDMKALAIIDSFRDVNYLEILYELV 128

Query: 143 PVKSVILTGLGDLLSAPKRTLVNFVVKYIKKMVPKYHLPHAISMRQSLSKGRRLQYVKPT 202
           P   +  +  G L S     L N +    +K    Y+    + +   +S  + ++  K  
Sbjct: 129 P--ELKTSQRGKLNSEEFPYLKNVIYVGQEKHRGMYNTTELMLLGNYVSDEKLIE-AKKG 185

Query: 203 IKGDDIAFLQYTGGTTGVSKGAMLTHGNIVSNLLQADAAYSPLLADGKEFVVTALPLYHI 262
           +  DD+  +QYT GTTG  KG MLTH NI++N               +E +   +PL+H 
Sbjct: 186 LDSDDVINMQYTSGTTGFPKGVMLTHKNILNNGYYIGEKQK---FTEEERLCLPVPLFHC 242

Query: 263 FALTVNCLLFLHKGANNLLITNPRDIPAFVSELKKHPFTALTGVNTLFNALVSSEEFKTL 322
           F + +  L  L  G   L++    D    ++ ++K   TA+ GV T+F A  S   F+  
Sbjct: 243 FGIVLGVLALLTHGGT-LVMLEIFDPLLVLAAIQKEKCTAVYGVPTMFIAEFSHPMFEMF 301

Query: 323 DFSNLKLSIGGGM-----AVQRAVADKWQGITKTRLLEGYGLTEASPLLTCCPYN--LEG 375
           D S+L+  I  G      A+++ ++D +       +   YGLTEASP+ T    +   E 
Sbjct: 302 DLSSLRTGIMAGSTCPIEAMKKVMSDMYM----REITISYGLTEASPVFTMTSVDDPFEK 357

Query: 376 YNGSIGFPVANTDMQVRDEE-GNVLPQGETGELFAKGPQVMKGYWQRPEETAKVIDKDGY 434
              S+G  + + ++++ D E G  L  G  GE+  +G  VMKGY++ PE+TA+VI+KDG+
Sbjct: 358 RVESVGKAMPHCEVKIIDPETGETLAPGNVGEICCRGYNVMKGYYKMPEKTAEVIEKDGW 417

Query: 435 LATGDIGYMDEQGFFFIVDRKKDMILVSGFNVFPNEVEEVVALHPKVLEVAAVGVPHEVS 494
           L +GD+   DE G++ IV R KDMI+  G N++P E+EE +   P + +   VG+P E  
Sbjct: 418 LHSGDLAVEDEDGYYKIVGRIKDMIIRGGENIYPREIEEFLYTMPGINDAQVVGIPDEKY 477

Query: 495 GELVKVFVVPKD-KSLTEEQVIKHCRHHLTGYKIPKLVEFRDELPKSNVGKILRRELRDE 553
           GE+V  FV+PK+   + EE V       +  YK+PK V   +E P +  GKI + +L + 
Sbjct: 478 GEIVGAFVIPKEGYEIKEEDVRDFALEKIARYKVPKHVFVVEEFPMTASGKIQKFKLTEL 537

Query: 554 A 554
           A
Sbjct: 538 A 538