Pairwise Alignments

Query, 236 a.a., hemolysin III family channel protein (RefSeq) from Shewanella loihica PV-4

Subject, 220 a.a., COG1272: Predicted membrane protein hemolysin III homolog from Xanthomonas campestris pv. campestris strain 8004

 Score =  128 bits (322), Expect = 8e-35
 Identities = 72/228 (31%), Positives = 120/228 (52%), Gaps = 18/228 (7%)

Query: 6   VPPQTIQPHEIGLNSQPSFAATAAPYSRAEELANALSHGLGVIAGILALAFSLHKGWDRL 65
           VPP  + PH               P +R    A+ + H  G+   I+  A+ + +     
Sbjct: 3   VPPSALAPHY------------KTPSARR---ADVVVHAAGLFLAIVGGAWMIWRA--HA 45

Query: 66  TNLQLGGLALYCLSIILLFLCSTLYHSVSAPKLKHKLKIADHCAIYLLIAGTYTPLMQIL 125
               +    +Y L ++++F CS  Y+  + P+ +  L+  DH  I+++IAG+YTP   + 
Sbjct: 46  NGTMVLATCVYALGLLVMFACSAAYN-FAPPQRQPMLRKFDHAGIFVMIAGSYTPFFLLA 104

Query: 126 LDSVEADAILIAIWSLALGGILFKTLFIHRFKIFSLVLYLVMGWLCVIVMKQLLAAMTPL 185
           LD     A+++++W +A  G+  K       K F + +YL++GW  ++V+KQ++A +   
Sbjct: 105 LDGSWRWAMILSVWGVASFGVFAKLFLPGIAKGFWVAIYLLLGWAGIVVIKQIVAGLDST 164

Query: 186 GFQLLLAGGIFYSTGVIFYVGKRIPYNHAIWHLFVLAGALSHFLCVYL 233
              L+ AGG FY+ GV FYV K + YN AIWH  VL GALSH+  ++L
Sbjct: 165 VLWLIAAGGAFYTVGVGFYVRKSMVYNRAIWHAHVLGGALSHWCAIWL 212