Pairwise Alignments

Query, 836 a.a., TonB-dependent receptor (RefSeq) from Shewanella loihica PV-4

Subject, 996 a.a., hypothetical protein from Xanthomonas campestris pv. campestris strain 8004

 Score =  148 bits (374), Expect = 1e-39
 Identities = 91/214 (42%), Positives = 128/214 (59%), Gaps = 7/214 (3%)

Query: 6   RLAAAVKLSLIATVSTSGYFVANNAVA-AEESASFERIAVTGSRIQRQDMETASPVTVID 64
           RL+AA+   L   V+ +G+ +A +    A ++   +++ VTGSRI R    T SPVT I 
Sbjct: 13  RLSAAL---LAVLVAPAGHALAQSENGVAPDTTDLDKVTVTGSRIARTGFVTPSPVTAIT 69

Query: 65  ASAIRAEGYNSVDEILQAQPAMA-GMAVGSTTNN-GADGVAQVDLRGMGASRTLVLLNGR 122
           A  IRA G  ++ +++   PA+A    +G++T   G  G+  +DLRGMG  RTLVL+NGR
Sbjct: 70  AEEIRATGATTISDLMARMPALAPSYTLGNSTRFIGTAGLGLLDLRGMGVDRTLVLVNGR 129

Query: 123 RMVNSGSGADSAVDLNTIPVAMIARVEILKDGASAVYGSDAIAGVVNIITKKDFEGFQLD 182
           R V S  G+ +AVD+NTIPV  + RVE++  GASAVYG+DA+AGVVN I KK F GF+  
Sbjct: 130 RHVGSSPGS-TAVDVNTIPVEWVERVEVITGGASAVYGADAVAGVVNFILKKSFTGFETR 188

Query: 183 INGGATDKGDGENVEISALYGFNTDGGNYTFGVA 216
              G  D+G+      S   G +  GG     V+
Sbjct: 189 AQTGLADEGNYNRSFASFSAGTDFAGGRGNIAVS 222



 Score =  119 bits (297), Expect = 1e-30
 Identities = 119/488 (24%), Positives = 191/488 (39%), Gaps = 88/488 (18%)

Query: 421 AWFSGDPLSQAIVDDISYLESTTGGNEQHIVSGVISGEAFDLEAGPVAYAIGAEYRHDSG 480
           AWF+    SQA +    +  S    N               L AG +  A G EYR +  
Sbjct: 525 AWFNTTARSQAKIQQTVFSASVANSN------------LLSLPAGDIGIAGGVEYRKEQS 572

Query: 481 YYNPDPVIVAGEGTAAQQDPTDGSYSVVSVYQEVSVPF------TDKLTGEFALRFDDYS 534
               DP+  +G         + G Y+V  V+ E ++P        D+L  + A R+ DYS
Sbjct: 573 EEITDPLAASGVTFLNAIPNSGGEYTVREVFVESTIPLLAGLPGVDRLALDLAGRYSDYS 632

Query: 535 TFGNASTWKIGLTYEATDDLMLRAVAATGFRAPNVSELFGGNVGSYDYLDDPW----GNE 590
           + G+  TW IGL +     L LR   A   RAP++ EL+     ++  ++DP      N 
Sbjct: 633 SIGSTKTWNIGLDWTIIPSLRLRGTLAQAVRAPSIGELYDSQSENFATINDPCNYLSSNS 692

Query: 591 QDPQI--------------------LVNYTS--------DPDLKAESSESYTAGLVYSPS 622
             P                      +  YT+        +P+LK E + S + GLV+ P 
Sbjct: 693 NRPGTAGDVALRQANCSALGVPVGWIDTYTANRPGVSGGNPELKPERARSLSYGLVWQPE 752

Query: 623 YIDGMSLTLDYWRFKIKDAISRLDVQAGLNACHAGDTTACETF-GITPDGNLENLTNPL- 680
           + +G  +++DYWR  ++DAI  +  +     C         +F G      L   T+P  
Sbjct: 753 FFEGFGMSVDYWRIDLQDAIGSVTAETNATRCVDNPGGINNSFCGFVQRAPLGGFTDPQG 812

Query: 681 ------TNVGYQDTS---------GIDFNLAYRF---EG------LGLDWSISNDLTYLL 716
                 + +G+Q  +         G+D  + YRF   EG      +G     S +  +  
Sbjct: 813 RIYPEHSIIGWQALNENLARSRRVGVDLEMDYRFQLGEGNTVLRLVGTRLIQSREWVF-Q 871

Query: 717 EFEQDGIDYTGTIGGMFGGYAKVKNNFSVKAGQGDWSLMYSN---RFIGEMDDINYGDTV 773
           +F ++  +Y   +       A+ +  ++    +  W + Y +   R   E  + N G   
Sbjct: 872 DFPEEYDEYVTYVTDP-RWRAQFQTKYNWNEWRASWDMNYVDGNLRVTPESYNSNPGSAS 930

Query: 774 ----DSVLYHNISGMYHINDS-ITASLGVKNFTDEKPVMVASGNEAGTVPEVYDTIGRQI 828
                S  YHN    Y    S I   LG+ N  D+ P     G++  +   +YD +GR  
Sbjct: 931 PIKNGSYTYHNFQFGYQFPGSKIDVYLGIDNAFDKDPPRNYFGSDFTSA--LYDNVGRFF 988

Query: 829 YGGVTVKF 836
           Y G TVKF
Sbjct: 989 YLGTTVKF 996