Pairwise Alignments

Query, 443 a.a., recombination factor protein RarA (RefSeq) from Shewanella loihica PV-4

Subject, 452 a.a., Conserved hypothetical alanine leucine valine rich protein from Mycobacterium tuberculosis H37Rv

 Score =  320 bits (820), Expect = 6e-92
 Identities = 179/423 (42%), Positives = 265/423 (62%), Gaps = 5/423 (1%)

Query: 14  PLAARMRPETLSQYIGQDHLLGEGKPLRQALEAGRAHSMMFWGPPGTGKTTLAELVAHYA 73
           PLA RMRP +L + +GQDHLL  G PLR+ +E     S++ +GPPG+GKTTLA L++   
Sbjct: 30  PLAVRMRPASLDEVVGQDHLLAPGSPLRRLVEGSGVASVILYGPPGSGKTTLAALISQAT 89

Query: 74  NAHVERISAVTSGVKEIRAAIEHAKSVAQSRGQRTLLFVDEVHRFNKSQQDAFLPFIEDG 133
               E +SA+++GVKE+RA IE+++  A   G++T+LF+DEVHRF+K+QQDA L  +E  
Sbjct: 90  GRRFEALSALSAGVKEVRAVIENSRK-ALLHGEQTVLFIDEVHRFSKTQQDALLSAVEHR 148

Query: 134 TVIFIGATTENPSFEINNALLSRARVYLIKRLQDEEIIKIVRQALEDGERGLGKRQLKMP 193
            V+ + ATTENPSF +   LLSR+ +  ++ L  E+   +V++A++D  RGLG+     P
Sbjct: 149 VVLLVAATTENPSFSVVAPLLSRSLILQLRPLTAEDTRAVVQRAIDD-PRGLGRAVAVAP 207

Query: 194 NEVAGKLASLCDGDARKALNLIELMSDMLPDGGEFNAQMLIEVAGQQLA-GFDKNGDQYY 252
            E    L  L  GDAR+AL  +E+ ++     GE  +   IE +  + A  +D++GDQ+Y
Sbjct: 208 -EAVDLLVQLAAGDARRALTALEVAAEAAQAAGELVSVQTIERSVDKAAVRYDRDGDQHY 266

Query: 253 DLISAVHKSIRGSAPDAALYWYCRMLEGGCDPLYVARRLLAIASEDIGNADPVAMSVAVN 312
           D++SA  KS+RGS  DAAL++  RML  G DP ++ARRL+ +ASEDIG A P A+ VAV 
Sbjct: 267 DVVSAFIKSVRGSDVDAALHYLARMLVAGEDPRFIARRLMILASEDIGMAGPSALQVAVA 326

Query: 313 AWECFHRVGPAEGERAIAQAVVYLACAPKSNAVYTAFKAARQLARETGSQPVPNHLRNAP 372
           A +    +G  E +  +A A ++LA APKSNAV TA  AA    +   +  VP HLR+  
Sbjct: 327 AAQTVALIGMPEAQLTLAHATIHLATAPKSNAVTTALAAAMNDIKAGKAGLVPAHLRDGH 386

Query: 373 TQLMADIGLGEGYRYAHDEPNHYASGECYFPEQLAGTQFYYPSEHGFEKRIKTKLATLAE 432
               A +G  +GY+Y+HD+P+   + + Y P++L    +Y P+  G E+ I  +L  L  
Sbjct: 387 YSGAAALGNAQGYKYSHDDPDGVVAQQ-YPPDELVDVDYYRPTGRGGEREIAGRLDRLRA 445

Query: 433 MDR 435
           + R
Sbjct: 446 IIR 448