Pairwise Alignments

Query, 443 a.a., recombination factor protein RarA (RefSeq) from Shewanella loihica PV-4

Subject, 459 a.a., replication-associated recombination protein A from Bifidobacterium breve UCC2003

 Score =  328 bits (840), Expect = 3e-94
 Identities = 187/434 (43%), Positives = 264/434 (60%), Gaps = 20/434 (4%)

Query: 13  RPLAARMRPETLSQYIGQDHLLGEGKPLRQALEAGRAHSM------MFWGPPGTGKTTLA 66
           RPLA RMRP TL + IGQ  +LG+G PLR+        S+      + +GPPG GKTTLA
Sbjct: 18  RPLAVRMRPRTLDEVIGQTQVLGQGSPLRRLANPASKGSLTAPSSVILFGPPGVGKTTLA 77

Query: 67  ELVAHYANAHVERISAVTSGVKEIRAAIEHAKSVAQSRGQRTLLFVDEVHRFNKSQQDAF 126
            +VA  +    E +SAVTSGVK++R  +  A     SRGQ T+LF+DEVHRF+KSQQDA 
Sbjct: 78  TIVAGQSGRVFEELSAVTSGVKDVRDVLTRAHERLVSRGQETVLFIDEVHRFSKSQQDAL 137

Query: 127 LPFIEDGTVIFIGATTENPSFEINNALLSRARVYLIKRLQDEEIIKIVRQALEDGERGLG 186
           LP +E+  V FIGATTENPSF +   LLSR+ V  ++ L+ +++ ++V++AL D ERGL 
Sbjct: 138 LPAVENRDVTFIGATTENPSFSVIKPLLSRSVVVKLESLEPDQLTELVQRALAD-ERGL- 195

Query: 187 KRQLKMPNEVAGKLASLCDGDARKALNLIELMSDMLPDGGE----------FNAQMLIEV 236
           K ++K  +E    +  +  GDARK+L ++E  +  +  G E              ++  V
Sbjct: 196 KGEVKATDEAVADIVRMAGGDARKSLTILEAAAGAV-TGDEARKKGARRPIITPDIVSTV 254

Query: 237 AGQQLAGFDKNGDQYYDLISAVHKSIRGSAPDAALYWYCRMLEGGCDPLYVARRLLAIAS 296
                  +DK+GD +YD+ISA  KS+RGS PDA +++  RML+ G DP ++ARR++  AS
Sbjct: 255 MDTATVRYDKDGDDHYDVISAFIKSMRGSDPDATIHYLARMLKAGEDPRFIARRIMIAAS 314

Query: 297 EDIGNADPVAMSVAVNAWECFHRVGPAEGERAIAQAVVYLACAPKSNAVYTAFKAARQLA 356
           E++G A P  + V V A +    VG  E    +A+A + +A APKSNA Y A   A    
Sbjct: 315 EEVGLAAPQILQVTVAAAQAVALVGMPEARIILAEAALAVATAPKSNAGYNAINQALADV 374

Query: 357 RETGSQPVPNHLRNAPTQLMADIGLGEGYRYAHDEPNHYASGECYFPEQLAGTQFYYPSE 416
                  VP +LRNAPT+LM + G  EGY+YAHD P   A  E Y PE+L GT++Y+P++
Sbjct: 375 DAGRIGAVPLYLRNAPTKLMKEWGNHEGYKYAHDWPGAVAPQE-YLPEELRGTEYYHPND 433

Query: 417 HGFEKRIKTKLATL 430
            G+E  +  +LA +
Sbjct: 434 RGYEHEVSQRLARI 447