Pairwise Alignments

Query, 395 a.a., RND family efflux transporter MFP subunit (RefSeq) from Shewanella loihica PV-4

Subject, 352 a.a., MexH family multidrug efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

 Score = 81.6 bits (200), Expect = 3e-20
 Identities = 91/360 (25%), Positives = 162/360 (45%), Gaps = 37/360 (10%)

Query: 5   KQFVLPIAVLVLGGGTFAVLASMKKPPEEKPVVDNTPVVAVEIIDKEPMTFTVNSYGIVN 64
           K  VL + +L L   + AVL++  K P + P +     V  E +  + ++ +++  G + 
Sbjct: 3   KNTVLSLTLLTLLMNS-AVLSA--KEPNQPPAIS----VVTESVQSQQISQSLSVVGKLK 55

Query: 65  AKYETDLVSQVTGEIVYLSDAFVRGGFVKKGQILAKIDPSDYEAALIDAKATVASAKATL 124
           A+   D+ ++V G++  +  A      VKKGQIL K+D    +AAL++AKA +   +  L
Sbjct: 56  AEQSVDIAAEVAGKVDMI--AVQANQQVKKGQILIKLDDDKAQAALVEAKAYLQDEQRKL 113

Query: 125 VQEKAYGKVAAEEWKRIENGTPTELSLRKPQLAQEVARLNSSEAGLKRATRNLERTVIKA 184
            + +   K  A         TPTE+  ++ ++    ARLN+++A       NL    I A
Sbjct: 114 TEYERLLKRNAI--------TPTEIDAQRARVEIGQARLNAAQA-------NLADLHITA 158

Query: 185 PYDALIESRHIGLGSYVSAGTQVGKLLSTEKAEIRLPLPDKEIRYLDNKGLGAQVMVKGN 244
           P+D  +       G +VSAG+++  L +     + L +P+   RYL     G +V     
Sbjct: 159 PFDGTVGFIDFSRGKWVSAGSELLTLDNLSLMRLDLQIPE---RYLPQLSKGMKVQGSSE 215

Query: 245 FAGENTSWKGQIVRSEGVIDNRSRMTYLVAEVIDPYGLKDNKQPLRYGSYITAQIHGSQA 304
            A  N  ++G +V     +D+R     L   V   +   D  Q L+ G  ++A+IH    
Sbjct: 216 -AWPNVQFEGSVV----AVDSRINQETLNLRVRVHFPNPD--QRLKPGMLMSARIHFPAI 268

Query: 305 QDVTTIARHLVVNDK---VAIMTPENTLAFKSVDILRQQGTQVVIGDGLDDGMRLITSAL 361
                  + L  +     V ++  +N    + V +  +   QVVI  GL  G +++   +
Sbjct: 269 SAPIIPVQALEYSGTKRFVYVIGEDNVAKRREVSLGARVENQVVIEKGLQIGEKIVVQGI 328