Pairwise Alignments

Query, 475 a.a., cytochrome c oxidase, cbb3-type, subunit I (RefSeq) from Shewanella loihica PV-4

Subject, 477 a.a., cytochrome-c oxidase, cbb3-type subunit I from Vibrio cholerae E7946 ATCC 55056

 Score =  853 bits (2203), Expect = 0.0
 Identities = 403/473 (85%), Positives = 433/473 (91%)

Query: 2   MNHSQPQGADYNYTVVRQFALTTVLWGIIGMTVGVLIAAQLIWPQLNFETPWLTYSRLRP 61
           M+  +    +YNYTVVRQF L T+LWGI+GM VGVLIAAQL+WPQLNF+TPWLTYSRLRP
Sbjct: 3   MSQEKQLEQNYNYTVVRQFTLVTILWGIVGMAVGVLIAAQLVWPQLNFDTPWLTYSRLRP 62

Query: 62  LHTNAVIFAFGTSALFATSYYIVQRTCQTRLFAPKLAAFTFWGWQAIILSAVITLPLGLT 121
           LHTNAVIFAFGTSALFATSYY+VQRTCQTRLF   L  FTFWGWQAII+SA ITLPLG T
Sbjct: 63  LHTNAVIFAFGTSALFATSYYVVQRTCQTRLFGGPLVPFTFWGWQAIIVSAAITLPLGYT 122

Query: 122 SSKEYAELEWPIDIAITIVWVAYAVVFFGTIVKRTTSHIYVANWFFGAFIITVAVLHIVN 181
           S KEYAELEWPIDIAI  VWVAYAVVFFGT+VKR TSHIYVANWFFGAFIITVAVLHIVN
Sbjct: 123 SGKEYAELEWPIDIAIAAVWVAYAVVFFGTLVKRKTSHIYVANWFFGAFIITVAVLHIVN 182

Query: 182 SMAVPVSLFKSYSLYSGAVDAMVQWWYGHNAVGFLLTAGFLGMMYYFVPKQAGRPVYSYR 241
           SMA+PVS+ KSYS+Y+GAVDAMVQWWYGHNAVGFLLTAGFLGMMYYFVPKQA RPVYSYR
Sbjct: 183 SMALPVSMGKSYSIYAGAVDAMVQWWYGHNAVGFLLTAGFLGMMYYFVPKQAERPVYSYR 242

Query: 242 LSIVHFWALIALYIWAGPHHLHYTALPDWTQSLGMVMSLILFAPSWGGMINGIMTLSGAW 301
           LSIVHFWALI+LYIWAGPHHLHYTALPDWTQSLGMVMSL+LFAPSWGGMINGIMTLSGAW
Sbjct: 243 LSIVHFWALISLYIWAGPHHLHYTALPDWTQSLGMVMSLVLFAPSWGGMINGIMTLSGAW 302

Query: 302 HKLRTDPVLRFLIVSLSFYGMSTFEGPMMAIKTVNALSHYTDWTIGHVHSGALGWVAMVS 361
           HKLR DP+LRFLIVSLSFYGMSTFEGPMM+IKTVNALSHYTDWTIGHVHSGALGWVAMVS
Sbjct: 303 HKLRYDPILRFLIVSLSFYGMSTFEGPMMSIKTVNALSHYTDWTIGHVHSGALGWVAMVS 362

Query: 362 IGSLYHLIPAIYGHGRMYSTQLINVHFWLATIGTVLYIVSMWISGVMQGLMWRAVNSDGT 421
           IGS+YHLIP ++G  RMYS  LIN HFWLATIGTVLYIV+MWISGVMQGLMWRAVNSDGT
Sbjct: 363 IGSVYHLIPRLFGQERMYSVSLINAHFWLATIGTVLYIVAMWISGVMQGLMWRAVNSDGT 422

Query: 422 LTYSFVEGLEASYPFYFVRFLGGLFFVTGMLLMAYNVVKTVKAPKESLPALAE 474
           LTYSFVE ++ASYPFY VRF+GG  F++GM LMAYN  KT+ APK SL A+ +
Sbjct: 423 LTYSFVESVQASYPFYTVRFIGGFIFLSGMFLMAYNAYKTISAPKNSLKAIVQ 475