Pairwise Alignments

Query, 800 a.a., putative ATP-dependent protease La-relatedprotein (RefSeq) from Shewanella loihica PV-4

Subject, 798 a.a., DNA-binding protein from Pseudomonas fluorescens FW300-N2E3

 Score = 58.9 bits (141), Expect = 1e-12
 Identities = 58/203 (28%), Positives = 91/203 (44%), Gaps = 34/203 (16%)

Query: 564 QDSVVGQINALSVVATSDHQFGAPSRITASVSLGEGAVFDIERKVELGGQIHSKGVMILT 623
           Q   VGQ+  L+         G    I A+V  G+G +          G +    V  +T
Sbjct: 586 QQDQVGQVTGLAWTQVG----GELLTIEAAVVPGKGQLIKT-------GSLGDVMVESIT 634

Query: 624 AYLATIFGQTDK--IPLT------THLTFEQNYSGVDGDSASMAELCAIVSAFAKVPLRQ 675
           A L  +  +     IPL       TH+   +  +  DG SA +    A+VSA   +P+R 
Sbjct: 635 AALTVVRSRAKSLGIPLDFHEKRDTHIHMPEGATPKDGPSAGVGMCTALVSALTGIPVRA 694

Query: 676 DVAITGSMNQFGQAQPIGGVNEKIEGFFDVCKIKGRHKG--QGVIIPRTNVQNLMLRADI 733
           DVA+TG +   GQ   IGG+ E         K+   H+G  + VIIP  NV++L    +I
Sbjct: 695 DVAMTGEITLRGQVLAIGGLKE---------KLLAAHRGGIKTVIIPEENVRDL---KEI 742

Query: 734 VDAVNKGEFSIWAIEHVDQAVEI 756
            D + K +  I  ++ +D+ ++I
Sbjct: 743 PDNI-KQDLQIKPVKWIDEVLQI 764