Pairwise Alignments

Query, 555 a.a., 30S ribosomal protein S1 (RefSeq) from Shewanella loihica PV-4

Subject, 563 a.a., SSU ribosomal protein S1P from Pseudomonas syringae pv. syringae B728a

 Score =  796 bits (2056), Expect = 0.0
 Identities = 400/545 (73%), Positives = 460/545 (84%), Gaps = 2/545 (0%)

Query: 1   MTESFADLFEQSLQQLEFRPGSIVRGTVVSI--QNGMVLVDAGLKSESPIPADQFKNAQG 58
           M+ESFA+LFE+SL+ L  + GSI+   +V I  Q G V V AGLKSE  IP +QF N  G
Sbjct: 1   MSESFAELFEESLKTLNLQAGSIITAIIVDIDYQAGWVTVHAGLKSEGLIPLEQFHNDAG 60

Query: 59  VLEIAVGDEVDVALDSVEDGFGETQLSREKAKRHEAWIVLEKAYEDAETVIGVINGKVKG 118
            L I +GDEV VALD+VEDGFGET+LSREKAKR E WIVLE A+   E V GVINGKVKG
Sbjct: 61  ELTIKIGDEVHVALDAVEDGFGETKLSREKAKRAECWIVLEAAFAAEEVVKGVINGKVKG 120

Query: 119 GFTVELNGIRAFLPGSLVDVRPVRDTAHLENKELEFKVIKLDQKRNNVVVSRRAVIESES 178
           GFTV++NGIRAFLPGSLVDVRPVRDT HLE KELEFKVIKLDQKRNNVVVSRR+V+E+E+
Sbjct: 121 GFTVDVNGIRAFLPGSLVDVRPVRDTTHLEGKELEFKVIKLDQKRNNVVVSRRSVLEAEN 180

Query: 179 SAERDALLENLQEGQAVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVG 238
           SAER+ALLE+LQEGQ VKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKR+KHPSEIVNVG
Sbjct: 181 SAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKRIKHPSEIVNVG 240

Query: 239 DEINVKVLKYDRERTRVSLGLKQLGEDPWLEISKRYPENTKLTGRVTNLTDYGCFVEIEE 298
           DEI+VKVLKYDRER RVSLGLKQLGEDPW+ I  RYPE+T++T RVTNLTDYGCF E+EE
Sbjct: 241 DEIDVKVLKYDRERNRVSLGLKQLGEDPWVAIKARYPESTRVTARVTNLTDYGCFAELEE 300

Query: 299 GVEGLVHVSEMDWTNKNIHPSKVVNLGDEVEVLVLDIDEERRRISLGLKQCKTNPWDDFA 358
           GVEGLVHVSEMDWTNKNIHPSKVV +GDEVEV+VLDIDEERRRISLG+KQCK+NPW+DF+
Sbjct: 301 GVEGLVHVSEMDWTNKNIHPSKVVQVGDEVEVMVLDIDEERRRISLGIKQCKSNPWEDFS 360

Query: 359 ERYAKGDKVTGKIKSITDFGIFIGLDGGIDGLVHLSDISWNGTGEEAVSDYKKGDEISAV 418
            ++ KGDK++G IKSITDFGIFIGLDGGIDGLVHLSDISWN  GEEAV  +KKGDE+  V
Sbjct: 361 GQFNKGDKISGTIKSITDFGIFIGLDGGIDGLVHLSDISWNEVGEEAVRRFKKGDELDTV 420

Query: 419 VLSVDPERERISLGVKQTEDDPFNAYLADKKKGAIVTGTVTAVDAKGVTIELAETVEGYL 478
           +LSVDPERERISLG+KQ E DPF+ Y+    KGAIV G V  VDAKG  I LA+ +E  L
Sbjct: 421 ILSVDPERERISLGIKQLESDPFSEYVTVNDKGAIVRGIVKEVDAKGAIITLADDIEATL 480

Query: 479 RVSDISRERIEDASTVYSVGDTVESKFMGVDRKNRSISLSIRAKDEADEKEAMANLNKQD 538
           + S+ISR+R+EDA  V   G+ +E+K + VDRK+R ISLSI++KD  DEKEA+ +L  + 
Sbjct: 481 KASEISRDRVEDARNVLKEGEEIEAKIISVDRKSRVISLSIKSKDVEDEKEAIQSLRSKP 540

Query: 539 DVAMS 543
           +VA S
Sbjct: 541 EVAES 545