Pairwise Alignments

Query, 555 a.a., 30S ribosomal protein S1 (RefSeq) from Shewanella loihica PV-4

Subject, 713 a.a., RNA-binding transcriptional accessory protein from Methanococcus maripaludis S2

 Score = 77.8 bits (190), Expect = 1e-18
 Identities = 35/77 (45%), Positives = 59/77 (76%), Gaps = 1/77 (1%)

Query: 186 LENLQEGQAVKGIVKNLTDYGAFVDLG-GVDGLLHITDMAWKRVKHPSEIVNVGDEINVK 244
           LE+L+EG  +KG V+N+ D+GAF+D+G   DGL HI+++A + +KHP ++++VGD ++V 
Sbjct: 635 LEDLKEGMILKGTVRNIVDFGAFIDIGVHHDGLAHISEIADRFIKHPLDVISVGDIVDVM 694

Query: 245 VLKYDRERTRVSLGLKQ 261
           V+  D ++ RVSL +K+
Sbjct: 695 VMDIDFDKKRVSLSIKR 711



 Score = 62.0 bits (149), Expect = 8e-14
 Identities = 31/76 (40%), Positives = 52/76 (68%), Gaps = 3/76 (3%)

Query: 276 ENTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNI-HPSKVVNLGDEVEVLVLD 334
           E   L G V N+ D+G F++I    +GL H+SE+   ++ I HP  V+++GD V+V+V+D
Sbjct: 640 EGMILKGTVRNIVDFGAFIDIGVHHDGLAHISEI--ADRFIKHPLDVISVGDIVDVMVMD 697

Query: 335 IDEERRRISLGLKQCK 350
           ID +++R+SL +K+ K
Sbjct: 698 IDFDKKRVSLSIKRAK 713



 Score = 44.7 bits (104), Expect = 1e-08
 Identities = 26/76 (34%), Positives = 41/76 (53%)

Query: 445 LADKKKGAIVTGTVTAVDAKGVTIELAETVEGYLRVSDISRERIEDASTVYSVGDTVESK 504
           L D K+G I+ GTV  +   G  I++    +G   +S+I+   I+    V SVGD V+  
Sbjct: 635 LEDLKEGMILKGTVRNIVDFGAFIDIGVHHDGLAHISEIADRFIKHPLDVISVGDIVDVM 694

Query: 505 FMGVDRKNRSISLSIR 520
            M +D   + +SLSI+
Sbjct: 695 VMDIDFDKKRVSLSIK 710



 Score = 27.7 bits (60), Expect = 0.002
 Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 7/83 (8%)

Query: 13  LQQLEFRPGSIVRGTVVSIQNGMVLVDAGLKSESPIP----ADQF-KNAQGVLEIAVGDE 67
           L+  + + G I++GTV +I +    +D G+  +        AD+F K+   V  I+VGD 
Sbjct: 633 LELEDLKEGMILKGTVRNIVDFGAFIDIGVHHDGLAHISEIADRFIKHPLDV--ISVGDI 690

Query: 68  VDVALDSVEDGFGETQLSREKAK 90
           VDV +  ++       LS ++AK
Sbjct: 691 VDVMVMDIDFDKKRVSLSIKRAK 713