Pairwise Alignments

Query, 555 a.a., 30S ribosomal protein S1 (RefSeq) from Shewanella loihica PV-4

Subject, 784 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 63.9 bits (154), Expect = 2e-14
 Identities = 30/76 (39%), Positives = 51/76 (67%), Gaps = 1/76 (1%)

Query: 186 LENLQEGQAVKGIVKNLTDYGAFVDLG-GVDGLLHITDMAWKRVKHPSEIVNVGDEINVK 244
           L++L+    ++G+V N+T++GAFVD+G   DGL+HI+ +  K +  P  +V  GD + VK
Sbjct: 646 LKDLKPEMILEGVVTNVTNFGAFVDIGVHQDGLVHISSLTDKFITDPHTVVKAGDVVKVK 705

Query: 245 VLKYDRERTRVSLGLK 260
           V++ D ER R+ L ++
Sbjct: 706 VMEVDVERRRIGLSMR 721



 Score = 58.5 bits (140), Expect = 9e-13
 Identities = 33/69 (47%), Positives = 47/69 (68%), Gaps = 3/69 (4%)

Query: 280 LTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNI-HPSKVVNLGDEVEVLVLDIDEE 338
           L G VTN+T++G FV+I    +GLVH+S +  T+K I  P  VV  GD V+V V+++D E
Sbjct: 655 LEGVVTNVTNFGAFVDIGVHQDGLVHISSL--TDKFITDPHTVVKAGDVVKVKVMEVDVE 712

Query: 339 RRRISLGLK 347
           RRRI L ++
Sbjct: 713 RRRIGLSMR 721