Pairwise Alignments

Query, 1295 a.a., ATP-dependent helicase HrpA (RefSeq) from Shewanella loihica PV-4

Subject, 1309 a.a., ATP-dependent RNA helicase HrpA from Vibrio cholerae E7946 ATCC 55056

 Score = 1513 bits (3916), Expect = 0.0
 Identities = 751/1285 (58%), Positives = 960/1285 (74%), Gaps = 9/1285 (0%)

Query: 13   LNQCFQADASRIKRRLHRLKKQADGEQKDEALAQLEEQAIAAAAKVESRRQNRPEISYPD 72
            L +C   D  R  +R+    K  +   ++    ++      +   VE R+Q  P+I YP 
Sbjct: 26   LGECLIKDRFRFSKRIDGASKIKNESARNAVFDEIALDIAQSMMVVEQRKQQMPKIEYPA 85

Query: 73   ALPVSQKRGEIAEAIANNQVVIVAGETGSGKTTQLPKICLELGLGTRGLIGHTQPRRLAA 132
             LPVSQKR +IA+AIA++QVVIVAGETGSGKTTQLPKIC ELG G  GLIGHTQPRRLAA
Sbjct: 86   LLPVSQKRDDIAQAIAHHQVVIVAGETGSGKTTQLPKICAELGRGKYGLIGHTQPRRLAA 145

Query: 133  RSVATRVAEELNSPLGEVVGFKVRFADAIKPTSYIKLMTDGILLAELSSDKYLDQYDTII 192
            RSVA R+AEE+ + LG  VG+KVRF D I   + IKLMTDGILLAE+ +D++L+QYDTII
Sbjct: 146  RSVANRIAEEMETELGGFVGYKVRFTDQISDQTQIKLMTDGILLAEIQNDRFLNQYDTII 205

Query: 193  IDEAHERSLNIDFILGYLKSVLKRRPDLKVIITSATIDVERFSKHFNNAPVIEVSGRTYP 252
            IDEAHERSLNIDFILGYLK +L RRPDLKVIITSATID ERFSKHF+NAP+IEVSGRTYP
Sbjct: 206  IDEAHERSLNIDFILGYLKQLLPRRPDLKVIITSATIDPERFSKHFSNAPIIEVSGRTYP 265

Query: 253  VETRYRPLVGEQDE--DLDLTDGIFAAVEELMAEGPGDILIFLNGEREIRDLADQLNKQQ 310
            VE RYRPL G+ D   D D  +GIF AV+EL  EG GDILIF+NGEREIRD AD L+K+ 
Sbjct: 266  VEVRYRPLAGDDDSESDRDQLEGIFQAVDELCDEGLGDILIFMNGEREIRDTADALSKRN 325

Query: 311  YRDTEVLPLYARLSYGEQSKVFKSHRGRRIVLATNVAETSLTVPGIKYVIDPGTARISRY 370
             RDTE++PLYARLS GEQ+K+F+ H GRRIVLATNVAETSLTVPGIKYVIDPGTARISRY
Sbjct: 326  LRDTEIVPLYARLSAGEQNKIFQPHAGRRIVLATNVAETSLTVPGIKYVIDPGTARISRY 385

Query: 371  SYRTKVQRLPIEPISQASANQRQGRCGRVAPGICIRLYDEADFNNRPEFTDPEILRTNLA 430
            SYRTKVQRLPIEPISQASANQR+GRCGR   GICIRLY E DF +RPEFTDPEILRTNLA
Sbjct: 386  SYRTKVQRLPIEPISQASANQRKGRCGRTEEGICIRLYSEEDFLSRPEFTDPEILRTNLA 445

Query: 431  SVILQMLSIGLGDIEGFPFIQPPDARYIRDGFLLLEELQSVRKH--KGQLQLTPLGRQLA 488
            SVILQM ++GLGDIE FPF++ PD R I+DG  LLEEL ++       + +LT  G+QLA
Sbjct: 446  SVILQMTALGLGDIEAFPFVEAPDKRNIQDGVRLLEELGAINDQIKDPKKRLTESGKQLA 505

Query: 489  SIPVDPRLARMVVQAKEYGCLHETLVITAGLSIQDPRERPMDKKQAADEAHRRFNDKDSD 548
             +P+DPRLARMV++A + GCL E ++I + LSIQDPRERP DK+Q+AD+ HRRFN +DSD
Sbjct: 506  RLPIDPRLARMVLEASKLGCLKEVMIIASALSIQDPRERPSDKQQSADDKHRRFNHEDSD 565

Query: 549  FIAWVKLWDHIKEQQKALSASQFRKLCKQEFLAYLRVREWQDLYTQLRQAVHDLKWKLNS 608
            F+  V LW +I +QQKAL+++QFR+ CK ++L YLRVREWQD+YTQL Q+  ++ +KLN 
Sbjct: 566  FLTLVNLWHYIGQQQKALTSNQFRRQCKLDYLNYLRVREWQDVYTQLHQSTREMGFKLND 625

Query: 609  EPADYELLHKSLLTGLLSHIGFKDKD-NEYLGARNRKFFVFPGSPLAKKGPKWIMAAEMT 667
            EP  Y  +H ++L GLLSHIG KD++ NEY GARN +F +FP S L KK PKW+M+AE+ 
Sbjct: 626  EPGSYHAVHSAILVGLLSHIGMKDQEKNEYHGARNARFNIFPASGLFKKQPKWVMSAELV 685

Query: 668  ETSRLFARCCAKIQPEWVEPLAGHLVKKSYVEPHFEAKQGSVVALENQQLYGLTIVNRRR 727
            ETS+L+AR  AKI+P+W+EPLA HL K+SY EPH+  K  +V+A E   LYG+ IV +R 
Sbjct: 686  ETSKLWARVVAKIEPDWIEPLAKHLSKRSYSEPHWSKKNAAVMAYEKVMLYGIPIVPKRL 745

Query: 728  VQYGPVEPVEAREIFIRSALAEGELRTKEAFFVNNRALIDDIEALEHKSRRRDILVDEQA 787
            V YG ++PV +REIFIRSAL EG+  TK AFF  NRAL+ ++E LEHKSRRRDILVD++ 
Sbjct: 746  VNYGTIDPVLSREIFIRSALVEGDWETKHAFFKQNRALLAEVEELEHKSRRRDILVDDEE 805

Query: 788  LVDFYEARIPEGIYNAPKLLTWWKQEKKRQPHLLDFEREQLMKRSDEHISALDFPDSWHQ 847
            L  FY+ R+   + +      WWK   ++ P LL FE+E L K    HI+ LD+P+ WHQ
Sbjct: 806  LFQFYDQRVGTEVVSGRHFDAWWKTASRKTPDLLSFEKEMLFKGDASHITDLDYPNFWHQ 865

Query: 848  GNFNLPLSYHFEPADVDDGVSVHLPVALLNQIEAQGFDWLVPGLREEKITALIKSLPKTL 907
            GN  L LSY FEP +  DGV+VH+P+ +LNQ+E  GFDW +PGLR E + +LIKSLPKTL
Sbjct: 866  GNLKLKLSYQFEPGENSDGVTVHIPLPILNQVEPHGFDWQIPGLRHELVVSLIKSLPKTL 925

Query: 908  RRNFVPAPDYARACLQAMANTNSSSETSLLEAMCKQLLRMSGVRISVDDFDLTQLAPHLL 967
            R+NFVPAP+YA A L  +    +  E  LL+AM K+L RM+GV +  +D+ L QL  HL 
Sbjct: 926  RKNFVPAPNYADAFLARV----TPFEMPLLDAMEKELRRMTGVTVLREDWKLDQLPAHLK 981

Query: 968  INFKVEDDKGKLIAQGRELEQLKDKLQGRVTQAIRNVAESGIEQSELTQWSFGDLPKQYE 1027
            I ++  D + + + +  +L +LK+ L+ +V + +  VA+  IEQ +L  WSFG+LPK Y+
Sbjct: 982  ITYRAVDHRNRKLNESCDLHELKESLKEKVQETLSQVADDDIEQRDLHTWSFGELPKVYQ 1041

Query: 1028 KKRGNFQVKAFPALVDNKDSVAIKLFDDEHEAGRCHKAGLQRLLLLNMPSPVKHLQNTLP 1087
            +KRG F+V+A+PALVD KDSV IKLF+ E E     +AG +RL+LLN+PSP+K+L   LP
Sbjct: 1042 QKRGGFEVRAYPALVDKKDSVEIKLFETEQEQLSAMRAGQRRLILLNVPSPIKYLHANLP 1101

Query: 1088 NKAKLAMYFNPFGQVQYLIDDILSAAVQQLLDEKGLDVRSAEQFEQAKDVVRQDLNPTAA 1147
            NK+KL +YFNP+G+V  LIDD ++  V +L++E+G  V   + FE  K+ VR +L  T  
Sbjct: 1102 NKSKLGLYFNPYGKVLDLIDDCIACGVDKLIEERGGMVWEPQAFEALKEHVRAELGDTVV 1161

Query: 1148 KIALQVEEILTLYQKVKKRLKGKISLDIAFAMSDIQTQLDNLVFKGFVEQCGWQRLSDLI 1207
            +IA QVE ILT    + KRLKGK+   +AFA+SD++ Q++ L+F GF  +CGW+RL D++
Sbjct: 1162 EIAKQVETILTTAYNINKRLKGKVDFTMAFALSDVKAQIEGLIFSGFATECGWKRLPDIL 1221

Query: 1208 RYIKAIDNRLDKLPVDPNRDRLHLHSINNVQQTLAAQLAKVPRSAPVPEALQEARWMIEE 1267
            RY++AI+ R++KLPVDPN+DRLH+  I +V       L K+P+   +P+ ++E RWM+EE
Sbjct: 1222 RYMRAIERRMEKLPVDPNKDRLHMLKIESVANKYKELLNKIPKGMAIPDNVREIRWMLEE 1281

Query: 1268 YRVSCFAQVLGTAYPISEKRILNRI 1292
             RVS FAQ LGT YP+S+KRI+N I
Sbjct: 1282 LRVSYFAQQLGTPYPVSDKRIINAI 1306