Pairwise Alignments

Query, 604 a.a., lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA (RefSeq) from Shewanella loihica PV-4

Subject, 582 a.a., ATPase from Synechococcus elongatus PCC 7942

 Score =  309 bits (791), Expect = 2e-88
 Identities = 176/522 (33%), Positives = 295/522 (56%), Gaps = 5/522 (0%)

Query: 83  DVLKTAPFVVIGLFTLRGLANFLSTYGISYISARMIMDMRQQVFEHYLRLPVSYIDAESS 142
           ++ + A   ++G F +   A +     ++  + ++  ++R   + H   L +SY +   +
Sbjct: 62  ELARLAAITIVG-FLIHKAAQYGQDSLMAKAALQIAYNLRVNTYRHIQSLSLSYFEKAKT 120

Query: 143 GNLISRVTFDTEQIARASGSALITIVRDGITVIGMLGVMFYNSWKLSLCILIVGPLIGLV 202
           G+L  R+T D +++               + +I +L  M Y +W L+L IL++ P++G +
Sbjct: 121 GDLTYRMTEDIDRVGEVVNKVFHDATPSILQLIVVLSYMIYLNWTLTLAILVIAPIMGFL 180

Query: 203 IAVVSRKFRKVSKQIQTAMGGVTSVTEQMIKGHKNVLVFGGQQAESQRFAKVNDDNRSRT 262
           +    ++    S++ Q+ +  ++S+  ++  G + V  F  +  E +RF++  + NR   
Sbjct: 181 VGWFGQQMLVFSRRSQSRISDLSSLLTEVFSGIRLVRAFAAEPYEIERFSREAERNREAR 240

Query: 263 MKLALAQAISQPLVMVIGSLALAFVLYASSLESMRADLTAGTFATILAAMLAMLQPIKSL 322
            + A  +AI  P++  + + ++ F++   S +     L      + +AA+  ++ PI  L
Sbjct: 241 YRTAWLRAIQYPVIGFLQAASILFIVVLGSWQISTGQLNGPNLGSYVAAIAMLIDPIVHL 300

Query: 323 TRVNAEFQRGIAACSTIFAVLDTPAEV--DNGTFETKRVEGRLSFDKVNFRYNNQEGLAL 380
                EF++G A+   I  +L     V  D  +     + G++ F +V+F Y +     L
Sbjct: 301 IDNFNEFKQGQASLDRIDELLSIEPAVQEDPQSRMLPPITGKVEFRQVSFSYRSDSAPVL 360

Query: 381 KEVDFQVNPGETLALVGRSGSGKSTIASLITRFYSDLDSGDIRLDDVSLRDYKLAALRRQ 440
           ++++  V PGE +ALVG SG+GKST+ +LI RFY   D G+I +D + +R   L +LRRQ
Sbjct: 361 RQLNLTVEPGEAVALVGASGAGKSTLVNLIPRFYDPQD-GEILVDGIPIRSVTLGSLRRQ 419

Query: 441 VALVSQQVTLINDTIAANIAYAYPGEVTEEQIIDAAKLANAWEFICNMPEGIYTQVGENG 500
           + +V Q+  L + TIA NIA+    +     + +AA++ANA +FI  MP+G  T VGE G
Sbjct: 420 IGIVPQETILFSGTIAQNIAFGQR-QFDRAAVEEAARIANAHQFISQMPDGYDTWVGERG 478

Query: 501 VMLSGGQRQRIAIARAILRDAPILILDEATSALDTESEKAIQTGLDNLRQNRTSIVIAHR 560
           V LSGGQRQR+AIARA+L D  ILILDEATSALD+ESE  +Q  L+ + Q RT  +IAHR
Sbjct: 479 VNLSGGQRQRLAIARAVLLDPRILILDEATSALDSESETLVQEALERVMQGRTVFIIAHR 538

Query: 561 LSTVENANQILVVDQGKVVERGTHSELLAKQGIYYNLYQMQF 602
           L+TV NA++ILV+++G++VE G H  LLA+ G Y   Y  QF
Sbjct: 539 LATVRNASRILVMERGQIVEAGNHDALLAEAGRYARYYAQQF 580