Pairwise Alignments

Query, 604 a.a., lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA (RefSeq) from Shewanella loihica PV-4

Subject, 597 a.a., ATP-binding protein from Burkholderia phytofirmans PsJN

 Score =  429 bits (1103), Expect = e-124
 Identities = 227/599 (37%), Positives = 367/599 (61%), Gaps = 26/599 (4%)

Query: 7   SEVGSVFLRLLTYLVPLKGVLFLSVFGLVLYGLVDATFIYSIKPFIDQGFASNVPTTPGL 66
           S    VF RL  Y+ PL  VL  ++  + +    DA     +KP +D+GF          
Sbjct: 17  SSAAVVFKRLWPYIQPLIWVLLGAIVAMAVSAATDAAIPALLKPLLDKGF---------- 66

Query: 67  VEGVDLGMGGGFNSDSDVLKTAPFVVIGLFTLRGLANFLSTYGISYISARMIMDMRQQVF 126
                     G +++       P  VIGL  +R L+ + S Y ++Y++ ++++D+R ++F
Sbjct: 67  ----------GAHANDKTKWFVPAAVIGLALVRSLSQYASGYLLAYVTNKILLDLRLKMF 116

Query: 127 EHYLRLPVSYIDAESSGNLISRVTFDTEQIARASGSALITIVRDGITVIGMLGVMFYNSW 186
              +   V++   E++  +I+ + F+  QI     S L+T+VRD +TV+ +LG +FY +W
Sbjct: 117 SRMIHTSVAFFQRETASTVINAIVFEVNQILNVLLSVLVTLVRDSLTVVFLLGYLFYLNW 176

Query: 187 KLSLCILIVGPLIGLVIAVVSRKFRKVSKQIQTAMGGVTSVTEQMIKGHKNVLVFGGQQA 246
           +L+L + ++ P IG ++  ++R+ R+++++ Q     ++ + E+ + G+K V V  G+Q 
Sbjct: 177 RLTLIVAVLLPAIGWLVGKINRRLRRLNREHQLLTNELSYIVEESVGGYKVVKVHNGEQY 236

Query: 247 ESQRFAKVNDDNRSRTMKLALAQAISQPLVMVIGSLALAFVLYASSLESMRADLTAGTFA 306
           E  RF  ++   R   M++ ++  ++QPL   + S+ALA V+  + ++S     T G F 
Sbjct: 237 EMDRFESMSKRLRGYAMRMTVSGGLAQPLTQFLASIALAVVITIAVVQSSSDQTTVGGFV 296

Query: 307 TILAAMLAMLQPIKSLTRVNAEFQRGIAACSTIFAVLDTPAEVDNGTFETKRVEGRLSFD 366
             + +ML ++ P+K L  VN   QRG+ AC  IF ++D P+E   G    +R  G + F 
Sbjct: 297 AFVTSMLLIISPLKHLMDVNQPLQRGMTACELIFGLIDEPSEPAGGGKPLERARGEVEFR 356

Query: 367 KVNFRYN---NQEGLALKEVDFQVNPGETLALVGRSGSGKSTIASLITRFYSDLDSGDIR 423
            V+F Y+         L +V F+V PGE +AL G SGSGK+T+ +L+ RF+ D  +G I 
Sbjct: 357 DVSFNYSANATHNRHTLDQVSFKVAPGEMVALAGPSGSGKTTLVNLLPRFF-DPTAGQIL 415

Query: 424 LDDVSLRDYKLAALRRQVALVSQQVTLINDTIAANIAYAYPGEVTEEQIIDAAKLANAWE 483
           +D V++ +Y L ALR Q+A+VSQ V L NDT+A N+AY    +   +++  A + AN W+
Sbjct: 416 VDGVAIPEYDLHALRSQIAMVSQDVVLFNDTVANNVAYGQTAD--PDKVKAALRAANLWD 473

Query: 484 FICNMPEGIYTQVGENGVMLSGGQRQRIAIARAILRDAPILILDEATSALDTESEKAIQT 543
            +  MP+GI T VG+NG+MLSGGQRQR+AIARAI +DAPILILDEATSALD+ESE+ +Q 
Sbjct: 474 TVEAMPKGIDTLVGDNGLMLSGGQRQRLAIARAIYKDAPILILDEATSALDSESERHVQA 533

Query: 544 GLDNLRQNRTSIVIAHRLSTVENANQILVVDQGKVVERGTHSELLAKQGIYYNLYQMQF 602
            L+ L + RT++VIAHRLST+E A++ILV++ G++VE G+H ELLA+ G+Y +L+++QF
Sbjct: 534 ALETLMKGRTTLVIAHRLSTIERASRILVMEAGRIVESGSHRELLAQDGLYAHLHRIQF 592