Pairwise Alignments

Query, 301 a.a., ABC transporter-related protein (RefSeq) from Shewanella loihica PV-4

Subject, 297 a.a., ABC transporter ATP-binding protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  117 bits (293), Expect = 3e-31
 Identities = 76/221 (34%), Positives = 118/221 (53%), Gaps = 6/221 (2%)

Query: 4   ITCKALSKQF-GSKRALNDINLELSAGQPIALVGPNGAGKTTLFSLLCGYIRPTEGAVEI 62
           I  K L+K +     AL D+NLE+ AG    L+GPNGAGK+TL  +L   + PT G VEI
Sbjct: 3   IIIKNLNKIYPNGNHALKDVNLEIPAGM-FGLLGPNGAGKSTLMRILVALMEPTSGQVEI 61

Query: 63  LGH--APGSTALLGKVAALPQDARLDPNLTIAAQLELFAQLQGFNAASARREC-QRVLAL 119
            G+        + G +  LPQD R          L+  A+L G   +  R++    +L  
Sbjct: 62  CGYDLMKQRKEIRGILGYLPQDFRFFAKYKTYEFLDYAARLSGMTHSRQRKQAVDEMLEN 121

Query: 120 VDLAEVAAQKPSSLSHGMSKRVSIAQALIGSPELVLLDEPTAGLDPANAKAIRELV-RAQ 178
           V L +V  +  + LS GM +R+ IAQALI  P+++++DEPT GLDP      R L+    
Sbjct: 122 VGLFDVRERYANKLSGGMKRRLGIAQALIHHPKVIIVDEPTTGLDPEERIRFRNLLSEVS 181

Query: 179 IGKTTFVISSHNLAELEKLCDKVLYLDKGVLNQSISIQDEL 219
               T ++S+H + ++   C+ +  +++G ++ + S QD L
Sbjct: 182 ENDVTIILSTHIVGDISSTCNNMALMNRGQVSFNGSPQDML 222