Pairwise Alignments

Query, 304 a.a., DNA polymerase III, delta prime subunit (RefSeq) from Shewanella loihica PV-4

Subject, 324 a.a., DNA polymerase III subunit delta' from Vibrio cholerae E7946 ATCC 55056

 Score =  115 bits (288), Expect = 1e-30
 Identities = 64/175 (36%), Positives = 99/175 (56%), Gaps = 3/175 (1%)

Query: 4   PWLTPVCEAFCSQLISGQQGHAYLLGIHQGYGGMQLANTLAQASLCMAPRAIGACGVCKS 63
           PWL PV + + + L +G+   A L+   +G G   L   +A+  +C + ++   CG C S
Sbjct: 9   PWLVPVWQPWQAGLAAGKISSATLIQASEGVGVESLVELMARTLMCTSSQS-EPCGFCHS 67

Query: 64  CQLFIAGNHPDCYQLEAD--GNQIKVDQVRELCQKLTATAQQGGRRVAVIKNCERLNTAA 121
           C L  +GNHPD + ++ +  G  I V+Q+R++ +    ++Q  G R+ VI+  + +N ++
Sbjct: 68  CGLMQSGNHPDFHVVKPEKIGKSITVEQIRQMNRIAQESSQLSGYRLIVIEPADAMNESS 127

Query: 122 ANALLKTLEEPGRETLLLLQSDTPSRLMATISSRCQRLHCQLPSREAVQEWLAAQ 176
           ANALLKTLEEP    L +L +     L+ TI SRCQRL    P+   V EWL  Q
Sbjct: 128 ANALLKTLEEPAPNCLFILVTSRIKHLLPTIVSRCQRLVLPAPTTALVVEWLKGQ 182