Pairwise Alignments

Query, 304 a.a., DNA polymerase III, delta prime subunit (RefSeq) from Shewanella loihica PV-4

Subject, 318 a.a., DNA polymerase III, delta prime subunit (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  353 bits (907), Expect = e-102
 Identities = 177/307 (57%), Positives = 225/307 (73%), Gaps = 5/307 (1%)

Query: 1   MDLPWLTPVCEAFCSQLISGQQGHAYLLGIHQGYGGMQLANTLAQASLCMAPRAIGACGV 60
           + LPWL    +AF +QL + +  HA L+GI   YGG  L+  +A+A++C  P   G CG 
Sbjct: 10  LSLPWLDVPRQAFLTQLQTQKVPHAQLVGIDSAYGGELLSVFMARAAMCSQPTHTGGCGF 69

Query: 61  CKSCQLFIAGNHPDCYQLEADGNQIKVDQVRELCQKLTATAQQGGRRVAVIKNCERLNTA 120
           CKSCQLF AGNHPD YQ+EADG+QIKVDQ+RELC +L+ATAQQ GRRVA+I + ERLN+A
Sbjct: 70  CKSCQLFDAGNHPDFYQIEADGHQIKVDQIRELCSRLSATAQQSGRRVAIIHHSERLNSA 129

Query: 121 AANALLKTLEEPGRETLLLLQSDTPSRLMATISSRCQRLHCQLPSREAVQEWLAAQFSLT 180
           +ANALLKTLEEPG++TLLLL SDTP+RLMATISSRCQRL    PS+  ++ WL  Q  + 
Sbjct: 130 SANALLKTLEEPGKDTLLLLHSDTPARLMATISSRCQRLPFVAPSKTLIKNWLIQQCQIQ 189

Query: 181 SDVTWCLPVVGGPVDLLTALND-----GRYEALIGLRKAWVQSLSSGHLCANLTNIDEKQ 235
            DVTWCL VVGGP+ L  +L        RY+ L+G RK W QSLSSGHLCA+L  I E+Q
Sbjct: 190 EDVTWCLSVVGGPLKLAESLQSNSTQPSRYQTLLGFRKDWAQSLSSGHLCASLLIISEQQ 249

Query: 236 VSDALKVLYVVLRQKLVKQKNADALINIKITKFAAKVMETYHSLSMMPNVNFMAVFQAFI 295
           + DALKVLY++LRQ L+K  N DA +  +I   AAKVM   HSLS MP+VN++ + Q+++
Sbjct: 250 IIDALKVLYLLLRQILLKNGNQDAYVQAQIGNLAAKVMGMCHSLSAMPSVNYLGLCQSYV 309

Query: 296 LEYQSLT 302
           LEY+ +T
Sbjct: 310 LEYRDIT 316