Pairwise Alignments

Query, 441 a.a., TolB domain-containing protein (RefSeq) from Shewanella loihica PV-4

Subject, 1084 a.a., protease from Vibrio cholerae E7946 ATCC 55056

 Score = 52.0 bits (123), Expect = 9e-11
 Identities = 50/219 (22%), Positives = 93/219 (42%), Gaps = 32/219 (14%)

Query: 210 PEPLMSPAWSPDGRRLAYVSFENKQAEVFVQDIYTQQRTKVTSFPGINGAPTFSPDGKKL 269
           P  L   A SPDG+++A+        ++++          +T     +  P +SPD + +
Sbjct: 38  PTWLRDIALSPDGQKIAFTY----AGQIWLVPAQGGDAVALTESGVYSETPIWSPDSQSI 93

Query: 270 ALTLSKDGQPEIYVADIATKAIKRVTNHYAIDTEASWTPDGKSLIFTSERGG-------- 321
           A T  + G  ++++  I     +R+T H A D   +++ DG+ L F+S R G        
Sbjct: 94  AFTADRYGLGDVFILSIQGGESRRLTYHGAKDIPYAFSADGQQLYFSSRRLGDDKANANV 153

Query: 322 -----RPQIYQVALASGKVTRLTFEGEWNLGGSISPDGRSMVFVNRTN-------GKFNI 369
                  Q+Y V  A G+  R+      +L  +ISP    +++ N+ +       G  + 
Sbjct: 154 KQGSFMAQLYSVPAAGGREQRVLPIAISDL--AISPSHSDILYTNQPSDEQPWRKGALSD 211

Query: 370 ARMD------LETRFMQVLTTTRLDESPSIAPNGTMVIY 402
           A  D      L  +  Q+ T    D +P  + +G+ + Y
Sbjct: 212 ATRDIWQWSPLTGKHTQITTFRGEDRNPVWSADGSSMYY 250



 Score = 36.6 bits (83), Expect = 4e-06
 Identities = 46/211 (21%), Positives = 77/211 (36%), Gaps = 28/211 (13%)

Query: 215 SPAWSPDGRRLAYVSFENKQAEVFVQDIYTQQRTKVTSFP---------GINGAPTFSPD 265
           +P WS DG  + Y+S +     V+ Q     +  ++T             + G   +  D
Sbjct: 238 NPVWSADGSSMYYLSEQAGSFNVWQQRFDGSEPVQITDHQKLPVRFLSASLQGDLAYGFD 297

Query: 266 GKKLALTLSKDGQPEIYVADIATKAI---KRVTNHYAIDTEASWTPDGKSLIFTSERGGR 322
           G+   L      Q E     I   A+   +   N     TE    P+   +   +    R
Sbjct: 298 GEIWRLKAGAK-QAEKVPVSIRRSAMPDGRHNVNFNLEATEMVVAPNAAEVAIVA----R 352

Query: 323 PQIYQVALASGKVTRLTFEGEWNLGGSISPDGRSMVFVNRTNGKFNIAR----------- 371
             +Y V+L SG   R+T   E     S S DG  +++ +   G +N+ +           
Sbjct: 353 GDVYVVSLLSGLTQRITDTPEAERDVSFSSDGYRLIYASEREGSWNLYQSYVNDGGKSFS 412

Query: 372 MDLETRFMQVLTTTRLDESPSIAPNGTMVIY 402
             L+     VLTT +    P  +PN   ++Y
Sbjct: 413 SSLDIIEEPVLTTEQDVIQPLYSPNLKRIVY 443



 Score = 27.3 bits (59), Expect = 0.002
 Identities = 32/156 (20%), Positives = 66/156 (42%), Gaps = 31/156 (19%)

Query: 204 QMLLRSPEPLMSPAWSPDGRRLAYV-----------SFENKQAEVFVQDIYTQQRTKVTS 252
           Q +  +PE     ++S DG RL Y            S+ N   + F   +   +   +T+
Sbjct: 366 QRITDTPEAERDVSFSSDGYRLIYASEREGSWNLYQSYVNDGGKSFSSSLDIIEEPVLTT 425

Query: 253 FPGINGAPTFSPDGKKLALTLSKDGQPEIYVADIATKAIKRVTNHYAI------DTEASW 306
              +   P +SP+ K++   + ++ +  + V DI       + + +A+      D    W
Sbjct: 426 EQDVI-QPLYSPNLKRI---VYRENRNTLKVYDIEQDKTYTLLDAHALYSYFDKDLSYQW 481

Query: 307 TPDGKSLIFTSERGGRPQIYQVALASGKVTRLTFEG 342
           +PD + ++ T +R         A+++G +  L F+G
Sbjct: 482 SPDSEYIV-TRDR---------AMSNGDIQLLKFDG 507



 Score = 26.9 bits (58), Expect = 0.003
 Identities = 11/47 (23%), Positives = 22/47 (46%)

Query: 293 RVTNHYAIDTEASWTPDGKSLIFTSERGGRPQIYQVALASGKVTRLT 339
           ++T     D    W+ DG S+ + SE+ G   ++Q      +  ++T
Sbjct: 228 QITTFRGEDRNPVWSADGSSMYYLSEQAGSFNVWQQRFDGSEPVQIT 274