Pairwise Alignments

Query, 441 a.a., TolB domain-containing protein (RefSeq) from Shewanella loihica PV-4

Subject, 700 a.a., periplasmic component of the Tol biopolymer transport system-like protein (RefSeq) from Shewanella amazonensis SB2B

 Score = 49.7 bits (117), Expect = 3e-10
 Identities = 28/105 (26%), Positives = 53/105 (50%), Gaps = 2/105 (1%)

Query: 218 WSPDGRRLAYVSFENKQAEVFVQDIYTQQRTKVTSFPGINGAPTFSPDGKKLALTLSKDG 277
           +SP+ RRL +VS E++  E++  D+  Q+R   TS      +P +S DG ++A   +   
Sbjct: 455 YSPEARRLVFVSNESEHNEIWTSDVDGQRRQMHTSLKRQATSPAWSHDGSRIAFVAADTN 514

Query: 278 QP--EIYVADIATKAIKRVTNHYAIDTEASWTPDGKSLIFTSERG 320
               ++++ DI   +I+ V + Y       W+ D   L+ ++  G
Sbjct: 515 HEGNKLHILDIRDNSIRVVASPYINHGRPEWSGDDSFLLASTVDG 559



 Score = 47.0 bits (110), Expect = 2e-09
 Identities = 57/227 (25%), Positives = 90/227 (39%), Gaps = 13/227 (5%)

Query: 186 KAKSPYKLMIADYDGYNEQMLLRSPEPLMSPAWSPDGRRLAYVSFENKQAEVFVQDIYTQ 245
           K  S ++L +   D    Q+   S + L +  WS DG+ L + S    + ++   D+   
Sbjct: 196 KNGSLFQLDLEHPDASPRQLTPDSSDELRA-VWSNDGKSLYFPSASAGECKITRLDLKDG 254

Query: 246 QRTKVTSFPGINGAPTFSPDGKKLALTLSKDGQPE--IYVADIATKAIKRVTNHYAIDTE 303
           Q T +     +  A   + DG  LA   +   Q    IY+ D+  K  + V    + DTE
Sbjct: 255 QLTPLADCTSVTTAIDLTVDGTGLAFITTNAPQKNAGIYLLDLTEKEAEPV--RLSCDTE 312

Query: 304 A-------SWTPDGKSLIFTSERGG-RPQIYQVALASGKVTRLTFEGEWNLGGSISPDGR 355
                   +++PDG++L      G     I+   LA G   RLT   E   G S   DGR
Sbjct: 313 CPYRDRDFAFSPDGQTLAIARRFGDISEDIFLRQLADGSERRLTQGIEDIRGLSWHRDGR 372

Query: 356 SMVFVNRTNGKFNIARMDLETRFMQVLTTTRLDESPSIAPNGTMVIY 402
            +V+     G      +D ET  +  L    L     +  +  +V Y
Sbjct: 373 RLVYSTEEAGNRGGYLIDTETGEITALDQDGLSYPRFVPDSDELVFY 419



 Score = 47.0 bits (110), Expect = 2e-09
 Identities = 39/152 (25%), Positives = 70/152 (46%), Gaps = 10/152 (6%)

Query: 221 DGRRLAYVSFE--NKQAEVFVQDIYTQQRTKV-----TSFPGINGAPTFSPDGKKLALTL 273
           DG  LA+++     K A +++ D+  ++   V     T  P  +    FSPDG+ LA+  
Sbjct: 274 DGTGLAFITTNAPQKNAGIYLLDLTEKEAEPVRLSCDTECPYRDRDFAFSPDGQTLAIAR 333

Query: 274 S-KDGQPEIYVADIATKAIKRVTNHYAIDTEASWTPDGKSLIFTSERGGRPQIYQVALAS 332
              D   +I++  +A  + +R+T         SW  DG+ L++++E  G    Y +   +
Sbjct: 334 RFGDISEDIFLRQLADGSERRLTQGIEDIRGLSWHRDGRRLVYSTEEAGNRGGYLIDTET 393

Query: 333 GKVTRLTFEGEWNLGGSISPDGRSMVFVNRTN 364
           G++T L  +G         PD   +VF +  N
Sbjct: 394 GEITALDQDG--LSYPRFVPDSDELVFYHYNN 423



 Score = 40.8 bits (94), Expect = 1e-07
 Identities = 30/115 (26%), Positives = 55/115 (47%), Gaps = 3/115 (2%)

Query: 249 KVTSFPGINGAPTFSPDGKKLALTLSKDGQP-EIYVADIA--TKAIKRVTNHYAIDTEAS 305
           ++TS  G    P+ SPDG+ L     + G+   ++  D+     + +++T   + +  A 
Sbjct: 167 RLTSDGGSERFPSVSPDGRFLVYGGQQPGKNGSLFQLDLEHPDASPRQLTPDSSDELRAV 226

Query: 306 WTPDGKSLIFTSERGGRPQIYQVALASGKVTRLTFEGEWNLGGSISPDGRSMVFV 360
           W+ DGKSL F S   G  +I ++ L  G++T L           ++ DG  + F+
Sbjct: 227 WSNDGKSLYFPSASAGECKITRLDLKDGQLTPLADCTSVTTAIDLTVDGTGLAFI 281



 Score = 37.7 bits (86), Expect = 1e-06
 Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 5/89 (5%)

Query: 192 KLMIADYDGYNEQMLLRSPEPLMSPAWSPDGRRLAYVSFENKQA--EVFVQDIYTQQRTK 249
           ++  +D DG   QM         SPAWS DG R+A+V+ +      ++ + DI      +
Sbjct: 473 EIWTSDVDGQRRQMHTSLKRQATSPAWSHDGSRIAFVAADTNHEGNKLHILDI-RDNSIR 531

Query: 250 VTSFPGIN-GAPTFSPDGKKLALTLSKDG 277
           V + P IN G P +S D   L L  + DG
Sbjct: 532 VVASPYINHGRPEWSGDDSFL-LASTVDG 559



 Score = 37.0 bits (84), Expect = 2e-06
 Identities = 33/141 (23%), Positives = 67/141 (47%), Gaps = 4/141 (2%)

Query: 291 IKRVTNHYAIDTEASWTPDGKSLIFTSERGGRP-QIYQVALASGKVT--RLTFEGEWNLG 347
           + R+T+    +   S +PDG+ L++  ++ G+   ++Q+ L     +  +LT +    L 
Sbjct: 165 VDRLTSDGGSERFPSVSPDGRFLVYGGQQPGKNGSLFQLDLEHPDASPRQLTPDSSDELR 224

Query: 348 GSISPDGRSMVFVNRTNGKFNIARMDL-ETRFMQVLTTTRLDESPSIAPNGTMVIYGTTY 406
              S DG+S+ F + + G+  I R+DL + +   +   T +  +  +  +GT + + TT 
Sbjct: 225 AVWSNDGKSLYFPSASAGECKITRLDLKDGQLTPLADCTSVTTAIDLTVDGTGLAFITTN 284

Query: 407 QGQQVLAAVSMDGRFKARLPV 427
             Q+      +D   K   PV
Sbjct: 285 APQKNAGIYLLDLTEKEAEPV 305



 Score = 32.0 bits (71), Expect = 6e-05
 Identities = 37/157 (23%), Positives = 65/157 (41%), Gaps = 10/157 (6%)

Query: 216 PAWSPDGRRLAYVSFE-NKQAEVFVQDIYTQQRT--KVTSFPGINGAPTFSPDGKKLALT 272
           P+ SPDGR L Y   +  K   +F  D+     +  ++T          +S DGK L   
Sbjct: 178 PSVSPDGRFLVYGGQQPGKNGSLFQLDLEHPDASPRQLTPDSSDELRAVWSNDGKSLYFP 237

Query: 273 LSKDGQPEIYVADIATKAIKRVTNHYAIDTEASWTPDGKSLIFTSERGGRPQ--IYQVAL 330
            +  G+ +I   D+    +  + +  ++ T    T DG  L F +    +    IY + L
Sbjct: 238 SASAGECKITRLDLKDGQLTPLADCTSVTTAIDLTVDGTGLAFITTNAPQKNAGIYLLDL 297

Query: 331 A--SGKVTRLTFEGEW---NLGGSISPDGRSMVFVNR 362
                +  RL+ + E    +   + SPDG+++    R
Sbjct: 298 TEKEAEPVRLSCDTECPYRDRDFAFSPDGQTLAIARR 334



 Score = 31.6 bits (70), Expect = 8e-05
 Identities = 27/128 (21%), Positives = 57/128 (44%), Gaps = 6/128 (4%)

Query: 202 NEQMLLRSPEPLMSPAWSPDGRRLAYVSFENKQAEVFVQDIYTQQRTKVTSFPGINGAPT 261
           +E+ L +  E +   +W  DGRRL Y + E      ++ D  T + T +    G++  P 
Sbjct: 351 SERRLTQGIEDIRGLSWHRDGRRLVYSTEEAGNRGGYLIDTETGEITALDQ-DGLS-YPR 408

Query: 262 FSPDGKKLALTLSKDGQPEIYV---ADIATKAIKRVTNHYAIDTEASWTPDGKSLIFTSE 318
           F PD  +L      + +  + +   A++       +  +++    A ++P+ + L+F S 
Sbjct: 409 FVPDSDELVFYHYNNHRQLVSMHPFAEVPQAPFPMIYGNFS-QRYADYSPEARRLVFVSN 467

Query: 319 RGGRPQIY 326
                +I+
Sbjct: 468 ESEHNEIW 475