Pairwise Alignments

Query, 478 a.a., deoxyribodipyrimidine photo-lyase (RefSeq) from Shewanella loihica PV-4

Subject, 469 a.a., deoxyribodipyrimidine photo-lyase from Vibrio cholerae E7946 ATCC 55056

 Score =  419 bits (1076), Expect = e-121
 Identities = 226/478 (47%), Positives = 291/478 (60%), Gaps = 20/478 (4%)

Query: 4   LLWLRRDFRLHDNPALSEAVRLRVK-QALFIATPAQWQQHDMAPIKADLIRRHLELMAGE 62
           L+W RRD R  DN AL+ A+       A++IATP QW QH +API+ADLI R L  +  E
Sbjct: 3   LVWFRRDLRSFDNTALTAALNSGDPVAAMYIATPEQWHQHHLAPIQADLIWRRLAELQQE 62

Query: 63  LAEYGIELVILSATDFSDQVRVLCDYCRDHGVKLLLANSEPELDEQERDK---QVMAA-G 118
           LA   + L      DF      +    +      +LAN + ELDEQ+RD+   Q+++  G
Sbjct: 63  LAALNVPLFYQQVADFQAAAVAVSQLAKTLNATQVLANRDYELDEQQRDQLAQQLLSEQG 122

Query: 119 IDLRLWQNDTILPPGSVLNQQGEMFKVFTPFKKAWLKCVAAKGIECVPTPAKSTPVKSIG 178
           I    + +  +LPPGSV  +QGE FKVFTPFK+AWL           P   K+ PV    
Sbjct: 123 IIWSAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAWLTLFQP------PVIGKNRPVALWN 176

Query: 179 DAQAASQLPQQPTPQSSSINLDYPLVDSGRWPDSEQVMGQLLPHFWQDKLLNYGERRDFP 238
              A ++L   P         DYP +DS  W    + +   L  F ++++ +Y + RDFP
Sbjct: 177 VPSALAELVWHPEQA-----FDYPRIDSTPWAADFETVRAQLRDFCRERVQDYHQARDFP 231

Query: 239 AIKGTSGLSPYLAIGAISSRWLALQLVQRHPEVIYDTQHGAFTWLNELIWRDFYKHLLFH 298
           A +GTS LSPYLAIG +S+R    +L   H   + +   GA  WL+ELIWR+FY+HL+  
Sbjct: 232 AREGTSSLSPYLAIGVLSARQCVARLY--HESSMGELSEGAQVWLSELIWREFYQHLVAI 289

Query: 299 YPELIKGGSFQPKYESLPWPNNEAHFQAWCEGRTGYPIVDAAMKQLRRTGWMHNRLRMIV 358
            P L K   F      L W N+   FQ WCEG+TGYPIVDAAM+QL +TGWMHNRLRMIV
Sbjct: 290 EPNLSKSRDFVEWGARLEWWNDNEKFQLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRMIV 349

Query: 359 ASFLTKHLLVDWHKGERFFMQQLIDGDFSANNGGWQWAASTGCDAQPYFRIFNPITQSQK 418
           ASFLTK L +DW  GER+FM +LIDGD++ANNGGWQW ASTGCD QPYFRIFNP++Q +K
Sbjct: 350 ASFLTKDLHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEK 409

Query: 419 FDPRGEFIRKYLPELREVPDKQIHFPHDYLASQGKAEIYPAPIVDHKAARQRALAFYK 476
           FDP G+FIR+++PELR V    IH P  Y A    + +YPA +VDHK  R+  L  YK
Sbjct: 410 FDPNGDFIRRWVPELRSVSSAYIHQPWTYPAV--NSVLYPARLVDHKQEREVTLRLYK 465