Pairwise Alignments

Query, 478 a.a., deoxyribodipyrimidine photo-lyase (RefSeq) from Shewanella loihica PV-4

Subject, 488 a.a., deoxyribodipyrimidine photo-lyase, 8-HDF type from Synechocystis sp000284455 PCC 6803

 Score =  290 bits (741), Expect = 1e-82
 Identities = 183/484 (37%), Positives = 255/484 (52%), Gaps = 27/484 (5%)

Query: 4   LLWLRRDFRLHDNPALSEAVRLRVK-QALFIATPAQWQQHDMAPIKADLIRRHLELMAGE 62
           LLW RRD RL+D+ AL++A +   K   +F       Q  DMAP +   +   L+ +   
Sbjct: 20  LLWHRRDLRLNDHLALAKARQKTAKIVGVFCLDNKILQAEDMAPARVAYLLGCLQSLQDH 79

Query: 63  LAEYGIELVILSATDFSDQVRVLCDYCRDHGVKLLLANSEPELDEQERDKQVMAA----G 118
               G EL++  A    D V++L       G   +    + E   Q+RD  V  A    G
Sbjct: 80  YQRLGSELLVFQA----DPVQLLPKLANTLGAHGVTWTLDTEPYAQKRDLAVAQALRERG 135

Query: 119 IDLRLWQNDTILPPGSVLNQQGEMFKVFTPFKKAWLKCVAAKGIECVPTPAKSTPVKSIG 178
           + +    +  +  PG VL Q G  + V+TPF K W +         VPTP     ++ + 
Sbjct: 136 LAIATEWDQLMHHPGEVLTQAGSPYTVYTPFWKNWSQLPKTSP---VPTPKD---LQGLT 189

Query: 179 DAQAASQLPQQPT--PQSSSINL--DYPLVDSGRWPDSEQVMGQLLPHFWQDKLLNYGER 234
            A+     P +P   PQ + +    D PL  +      E+   Q L  F    L  Y + 
Sbjct: 190 PAEKEKLAPLEPLAIPQLADLGFIWDQPLPLT----PGEEAAEQRLDWFVAHGLEEYQQN 245

Query: 235 RDFPAIKGTSGLSPYLAIGAISSRWLALQLVQRHPEVIYDTQHGAF-TWLNELIWRDFYK 293
           R+FPA+ GTS LS  L  G IS R L    ++   +   +    +  TW  EL WR+FY+
Sbjct: 246 RNFPALDGTSQLSAALKFGVISPRTLWQTTLEAWEQSRSEEARASIETWQQELAWREFYQ 305

Query: 294 HLLFHYPELIKGGSFQPKYESLPWPNNEAHFQAWCEGRTGYPIVDAAMKQLRRTGWMHNR 353
           H L+ +P L +G  ++  ++  PW  N+ HFQAWCEGRTGYPI+DAAM QL +TGWMHNR
Sbjct: 306 HCLYSFPALAQG-PYRSPFQEFPWEENQDHFQAWCEGRTGYPIIDAAMAQLNQTGWMHNR 364

Query: 354 LRMIVASFLTKHLLVDWHKGERFFMQQLIDGDFSANNGGWQWAASTGCDAQPYFRIFNPI 413
            RMIVASFL K L+++W  GE +FMQ L DGD +ANNGGWQW+AS+G D +P  RIFNP 
Sbjct: 365 CRMIVASFLIKDLILNWQWGELYFMQTLYDGDLAANNGGWQWSASSGMDPKP-LRIFNPH 423

Query: 414 TQSQKFDPRGEFIRKYLPELREVPDKQIHFPHDYLASQGKAEIYPAPIVDHKAARQRALA 473
           TQ+QKFDP GE+IR +LP+L       +           ++  YP PIVDH   ++    
Sbjct: 424 TQAQKFDPEGEYIRTWLPQLARFDTGDL-LTGKLTPGSRRSVNYPEPIVDHNQQQREFKR 482

Query: 474 FYKV 477
            Y++
Sbjct: 483 RYQL 486