Pairwise Alignments

Query, 336 a.a., dicarboxylate TRAP transporter (succinate, fumarate, L-malate, and alpha-ketoglutarate), solute receptor component (from data) from Shewanella loihica PV-4

Subject, 331 a.a., C4-dicarboxylate ABC transporter from Pseudomonas fluorescens FW300-N2C3

 Score =  337 bits (863), Expect = 3e-97
 Identities = 174/327 (53%), Positives = 229/327 (70%), Gaps = 1/327 (0%)

Query: 10  IKQIVKMTSIAALLGASLNSWAA-PTEIKFSHVVAENTPKGQMALKFKQLVEERLPGEYQ 68
           +K + K  +     GA   + AA P  IKFSHVV + TPKGQ AL FK+L EERLPG+ +
Sbjct: 2   LKPVWKALACTLAFGAWGTAMAAEPIVIKFSHVVGDQTPKGQGALMFKKLTEERLPGKVK 61

Query: 69  VNVFPNSQLFGDNNELSALLLNDVQFVAPSLSKFERYTKKLQLFDLPFLFKDMDAVNRFQ 128
           V V+PNS L+GD+ E+ ALLL +VQ +A SL+KF++YTK +QLFDLPFLF D+ AV+RFQ
Sbjct: 62  VEVYPNSTLYGDDKEMEALLLGEVQIIARSLAKFDQYTKTVQLFDLPFLFDDIAAVDRFQ 121

Query: 129 QSDAGQQLLNSMKRKGVVGLGYLHNGMKQFSASSPLVLPEDAQGKKFRIMASDVLAAQFQ 188
           QS  GQ+LL SM+ K V+GL Y HNGMKQ SAS PL  PEDA+G  FRI  S VL  QF+
Sbjct: 122 QSPEGQKLLKSMESKNVIGLAYWHNGMKQLSASKPLRTPEDARGLTFRIQTSAVLEEQFK 181

Query: 189 AVEAIPVKKPFSEVFTLLQTRAIDGQENTWSNIYSKKFYEVQSNITESNHGVLDYMVVTS 248
           AV+A      FS V+  L+T  ++G ENT+SN Y++K  EVQ  +TESNHG+LDYM++T+
Sbjct: 182 AVDAKAKPMIFSVVYQGLRTGLVNGTENTYSNFYNQKLNEVQKYVTESNHGILDYMLITT 241

Query: 249 NTFWKSLPADKRKVIKASLDEAIAYGNEIAAAKVNKDKQAIIDSKRSEVTYLTPEQRAAW 308
           + FW  LP D R  +   + E+ A+ N+ A     +DKQ ++D+K +E+  LTP++R+ W
Sbjct: 242 SDFWNGLPPDIRSELDQIVVESTAHANQEAEKFNQQDKQHVLDAKTTEIITLTPQERSVW 301

Query: 309 VNAMKPVWAQFEDKIGKDLIDAAVASN 335
              MKPVWA+FE +IG DLI AA ASN
Sbjct: 302 RERMKPVWAKFEKEIGPDLIKAAEASN 328