Pairwise Alignments

Query, 336 a.a., dicarboxylate TRAP transporter (succinate, fumarate, L-malate, and alpha-ketoglutarate), solute receptor component (from data) from Shewanella loihica PV-4

Subject, 336 a.a., periplasmic binding protein from Sinorhizobium meliloti 1021

 Score =  118 bits (295), Expect = 2e-31
 Identities = 90/327 (27%), Positives = 163/327 (49%), Gaps = 17/327 (5%)

Query: 20  AALLGASLNSWAAPTEIKFSHVVAENTPKGQ-MALKFKQLVE---ERLPGEYQVNVFPNS 75
           A  LGAS+ + A   +  F++ +A N P    + ++ K+  +   E   G  ++N+FP+S
Sbjct: 14  AVALGASIRTKAHAAD--FTYKLANNLPVTHPLNIRLKEAADKILEETGGRLKINIFPSS 71

Query: 76  QLFGDNNELSALLLNDVQFVAPSLSKFERYTKKLQLFDLPFLFKDMDAVNRFQQSDAGQQ 135
           QL  D   LS L     +F + S            +  + F F D D V +    + G  
Sbjct: 72  QLGNDTETLSQLRNGATEFFSLSPLILSTLVPNAAISGIGFAFPDYDTVWKAMDGELGAY 131

Query: 136 LLNSMKRKGVVGLGYL-HNGMKQFSASS-PLVLPEDAQGKKFRIMASDVLAAQFQAVEAI 193
               +++KG+V +  +  NG +Q ++S+ P+  PED +G K R+  S +  + F A  A 
Sbjct: 132 ARGEIEKKGLVPMEKIWDNGFRQITSSNKPINTPEDLKGFKIRVPPSPLWQSMFTAFGAA 191

Query: 194 PVKKPFSEVFTLLQTRAIDGQENTWSNIYSKKFYEVQSNITESNHGVLDYMVVTSNTFWK 253
           P    F+EV+T L T  +DGQEN  +   + K YEVQ +   +NH    + ++ +   W+
Sbjct: 192 PTTINFAEVYTALSTGTVDGQENPLAIASTAKLYEVQKHCAMTNHMWDGFWMLANKQAWE 251

Query: 254 SLPADKRKVIKASLDEAIAYGNEIAAAKVNKDKQAIIDSKRSEVTYLTPEQRAAWVNAMK 313
           +LP D R++    L+E+ A       AKVN   +  +   +S +T+  P+ +AA+   ++
Sbjct: 252 TLPEDIREIAAKHLNES-AIAQRTDTAKVNDTVREQL--TQSGMTFTDPD-KAAFRETLR 307

Query: 314 PV--WAQFEDKIGKD---LIDAAVASN 335
               +A+++ K G +   +++ AV ++
Sbjct: 308 SAGFYAEWKGKFGDEAWAILEKAVGTS 334