Pairwise Alignments

Query, 336 a.a., dicarboxylate TRAP transporter (succinate, fumarate, L-malate, and alpha-ketoglutarate), solute receptor component (from data) from Shewanella loihica PV-4

Subject, 342 a.a., C4-dicarboxylate ABC transporter from Cupriavidus basilensis FW507-4G11

 Score =  118 bits (295), Expect = 2e-31
 Identities = 96/326 (29%), Positives = 155/326 (47%), Gaps = 15/326 (4%)

Query: 20  AALLGASLNSWAAPTEIKFSHVVAENTPKGQMALKFKQLVEERLPGEYQVNVFPNSQLF- 78
           AAL  A   + +   E K S V+    P G+    +  LV +R  G   + ++P + L  
Sbjct: 17  AALAPAGAMAQSYKAEYKMSLVLGPAFPWGKGGEIWADLVRQRTSGRINIKLYPGTSLVA 76

Query: 79  GDNN-ELSALLLNDVQFVAPSLSKFERYTKKLQLFDLPFLFKDMDAVNRFQQSDAGQQLL 137
           GD   E SA+    +     S   +    K+L LF LPFL  D  A++   Q + G+ + 
Sbjct: 77  GDQTREFSAIRQGVIDMAVGSTINWSPQVKELNLFSLPFLMPDYKALDALTQGEVGKSIF 136

Query: 138 NSMKRKGVVGLGYLHNGMKQFSASS-PLVLPEDAQGKKFRIMASDVLAAQFQAVEAIPVK 196
            ++ + GVV L +  NG ++ S S   +  PED +G K R++ S +    F A+ A P +
Sbjct: 137 ATLDKSGVVPLAWGENGFREVSNSKREIRKPEDLKGMKLRVVGSPLYIETFNALGANPTQ 196

Query: 197 KPFSEVFTLLQTRAIDGQENTWSNIYSKKFYEV-QSNITESNHGVLDYMVVTSNTFWKS- 254
             +++    + + A+DGQEN  S   + K Y V Q  +T   +     + V +   W+S 
Sbjct: 197 MSWADAQPAMASGAVDGQENPQSVFAAAKLYTVGQKYVTTWGYVADPLIFVVNKQIWESW 256

Query: 255 LPADKRKVIKASLD-----EAIA-YGNEIAAAKVNKDKQAIIDSKRSEVTYLTPEQRAAW 308
            PAD+  V +A++D      A+A  G   A A   KD +A       +V  LTP +  A+
Sbjct: 257 TPADREIVKQAAIDAGKQETALARKGLVEAGAPAWKDMEA----HGVKVAQLTPAEHDAF 312

Query: 309 VNAMKPVWAQFEDKIGKDLIDAAVAS 334
             A   V+ +++ +IG DL+  A AS
Sbjct: 313 RKATAKVYDKWKKQIGVDLVSKAEAS 338