Pairwise Alignments

Query, 212 a.a., dicarboxylate TRAP transporter (succinate, fumarate, L-malate, and alpha-ketoglutarate), small permease component (from data) from Shewanella loihica PV-4

Subject, 226 a.a., C4-dicarboxylate ABC transporter permease from Azospirillum brasilense Sp245

 Score = 62.0 bits (149), Expect = 8e-15
 Identities = 42/184 (22%), Positives = 73/184 (39%), Gaps = 46/184 (25%)

Query: 4   RFFSHIEEVVLNALITAMTLLVFVEVIARF----------FFNTGFLWIQELTLTICGWF 53
           +   H+EE+++  L+ A T ++F+ V  R+            +    W QEL + +  W 
Sbjct: 2   KILDHLEEILIAFLMAAATTIIFISVAHRYAAGFPIIQDYILHWNLAWAQELCIYMFVWM 61

Query: 54  VLFGMSYGVKVGAHIGVDAFVKKLPAQGRKYTAILAVAICLIYCGMFLVGSWDYLAKMYQ 113
             FG +YGV+ G H+GVD  + KL    R    +  +     + G               
Sbjct: 62  AKFGAAYGVRTGIHVGVDVLINKLSTPLRAKFIVFGLLAGATFTG--------------- 106

Query: 114 IGVPMEDIDLPHFLIGGLDGDFAW-----EYLRIDVEEPAVPLWTSQSILLIGFILLTWR 168
                        ++G +   F W     E +  D+E    P+W     + +G  L+ +R
Sbjct: 107 -------------VVGTMGSTFVWHMSDTEQVSADLE---WPMWIIYLAIPLGSYLMCFR 150

Query: 169 FLQL 172
           FLQ+
Sbjct: 151 FLQV 154