Pairwise Alignments

Query, 212 a.a., dicarboxylate TRAP transporter (succinate, fumarate, L-malate, and alpha-ketoglutarate), small permease component (from data) from Shewanella loihica PV-4

Subject, 232 a.a., C4-dicarboxylate ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

 Score =  120 bits (300), Expect = 3e-32
 Identities = 73/201 (36%), Positives = 104/201 (51%), Gaps = 8/201 (3%)

Query: 2   MSRFFSHIEEVVLNALITAMTLLVFVEVIARFFFNTGFLWIQELTLTICGWFVLFGMSYG 61
           + +F   IEE ++   + AMTLL F  VI R+ FN   LW  E T+ +  W VL G S+G
Sbjct: 21  VGQFTDSIEEFLIAFFMGAMTLLTFANVIMRYLFNDNILWALEGTVFMFAWMVLVGASFG 80

Query: 62  VKVGAHIGVDAFVKKLPAQGRKYTAILAVAICLIYCGMFLVGSWDYLAKMY--QIGVPME 119
           VK   HIGVD  +   PA+ RK  A++AVA CL +  + L+GSW+Y       +     +
Sbjct: 81  VKRHFHIGVDVLINIAPARLRKLYALVAVACCLAFSILLLIGSWNYWHPFITERAWYETD 140

Query: 120 DIDLPHFLIGGLDGDFAWEYLRIDVEEPAVPLWTSQSILLIGFILLTWRFLQLALAIITN 179
           DI +P  L       F  +++        +P +   + L IG  LLT+RFLQ+A  IIT 
Sbjct: 141 DIPMPDML------QFLADWVNEGERYEKLPRFIPYAALPIGMALLTFRFLQIAWQIITG 194

Query: 180 KTDGFAFADEAKESMHLIDQE 200
           K D      EA+E +  +  E
Sbjct: 195 KLDRMIAGHEAEEDLEALKAE 215