Pairwise Alignments

Query, 212 a.a., dicarboxylate TRAP transporter (succinate, fumarate, L-malate, and alpha-ketoglutarate), small permease component (from data) from Shewanella loihica PV-4

Subject, 166 a.a., C4-dicarboxylate transport system, small permease component from Caulobacter crescentus NA1000

 Score = 47.4 bits (111), Expect = 2e-10
 Identities = 38/159 (23%), Positives = 68/159 (42%), Gaps = 10/159 (6%)

Query: 2   MSRFFSHIEEVVLNALITAMTLLVFVEVIARFFFNTGFLWIQELTLTICGWFVLFGMSYG 61
           +SR+ S          + AMT ++   V AR+       W ++  L +  WFVL   + G
Sbjct: 9   ISRWISRATLAFAAIGLIAMTGIIGWAVFARYSLGDAPAWAEQAALLLMVWFVLLAAAVG 68

Query: 62  VKVGAHIGVDAFVKKLPAQGRKYTAILAVAICL-------IYCGMFLVGSWDYLAKMYQI 114
           V+   H+G+ A    +P   R+   ++++           ++ G  +  +W +   +  +
Sbjct: 69  VREQFHLGMSAATNAMPPFLRRLCRVVSLLAMAAFGLAMGVWGGELVARTWAF--DIPTL 126

Query: 115 GVPMEDIDLPHFLIGGLDGDFAWEYLRIDVEEPAV-PLW 152
           GVP     LP  + G +   FA E+L  +     V PLW
Sbjct: 127 GVPRGAAYLPLPIAGWMSVFFALEHLICEARGRKVEPLW 165