Pairwise Alignments

Query, 920 a.a., polysaccharide export protein (RefSeq) from Shewanella loihica PV-4

Subject, 789 a.a., polysialic acid transport protein kpsD precursor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  214 bits (544), Expect = 2e-59
 Identities = 171/709 (24%), Positives = 327/709 (46%), Gaps = 100/709 (14%)

Query: 65  QQNLDNPQVVQPRVNDQFSQPRATNDVVDHSRDAANELNFSQDEQKKQLARFGYELFQGE 124
           Q N++  +     +N+   +     +  D   D     + ++ +Q      FG  +F   
Sbjct: 58  QNNVNTSKSTGTDINESRLREETKENTSDMLEDHPTTQDLARGDQV-----FGRNIFNTR 112

Query: 125 PTTFAPVSDVPVPGEYLVGPGDRIKVQLFGKENKEYDLVINREGSIQFPELGPISVAGLS 184
             TF P  ++  P  Y +GPGD + + ++G         I+ EG+I   ++GP++++G++
Sbjct: 113 NLTFEPSVNLATPTNYRLGPGDEVIIDIWGASQNTIRQQISPEGTINIQKIGPVNLSGMT 172

Query: 185 FAELRESLSHRISQQMIGIESN--------ITMGELRSIRIFIAGDAYKPGSYTVSSLST 236
            +   + L + +++   G+ +         +T+G +R+I+I + G+  +PG+Y +SS ST
Sbjct: 173 VSAANDYLKNALNKIYNGLNNTTDPTSDIRLTLGNIRTIQINVMGEVVQPGTYALSSFST 232

Query: 237 ITQALFVAGGVNEIGSLRNIQVKRNGKLVGSMDLYDLLMRGDASGDIRLRSGDVVFIPPV 296
           +  AL+ AGGV++IGSLRN+Q+ RNGK + ++D+Y+ +M+G+   DIRL+ GDVV +P  
Sbjct: 233 VFHALYRAGGVSDIGSLRNVQLVRNGKNIATIDVYEFIMKGNTQDDIRLQEGDVVIVPAY 292

Query: 297 GGLVSITGEVRRPAIYELKRNETVADIVAMAAGVKPGAYPKSSSIERYNSN--GLRSIVN 354
             LV I+G+V+RP  +E+K+ E +A ++  A G +  AY +S  + R N     + ++ +
Sbjct: 293 DVLVKISGKVKRPMRFEMKKEENLATLIKYAGGFEADAYTRSLRVVRQNGEEYEVNTVKD 352

Query: 355 VDLTSTQGKSTKAQAGDFIRVKNASGQFEDAITVVGAVVRPGKYQWFDGQ--KVSDLLPS 412
           +D +       K + GD +  +    +F + + + GAV RPG YQ   G+   + +L+  
Sbjct: 353 IDYS-----IYKMRNGDVVTAEAILNRFTNKLEIRGAVYRPGIYQ-LSGKLNTIRELVNE 406

Query: 413 LWGDLSISADLNYAIIVREVNRYGKVKVLQFSPSRAIAEKDVTQDLLLAPRDKVMLFNYS 472
             G L+  A LN A++ R+                    +D+T +++     ++ + +  
Sbjct: 407 AQG-LTGDAFLNRAVLYRQ-------------------REDLTSEVV-----QIDIRSIM 441

Query: 473 DDTQNRYELNKLVKHRVKKVTSLTGDSLVGNDLFKAGFSQLDKMQLSQRSQIGGVVVAKE 532
           D T        L+K+ +  + S+      GN       +Q D    +    +  +++   
Sbjct: 442 DGTSPNL---ALMKNDILYIPSIHDLEDRGNVTVHGEVAQPDSYPYADNMTLEDLIIQAG 498

Query: 533 APDDKEQLVKGEVNKMLAN--------------LFEDKELIKLSGSMNRSELLYPVVAQL 578
              +    V+ +V++ + N               F  K+   + G      +L P     
Sbjct: 499 GLKEAASTVRIDVSRRIKNPRSTADNDTIGQMYTFSLKDGFVIDG--QPGFILQPYDEVY 556

Query: 579 AAQGNSDKGTQVVAISGKVRHPGVYPL-SQGAKVKDLVIAAGGLVEGAYTARAELTTTVI 637
             +    +  Q VAI G++   G Y + S+  ++ DLV  AGG    AY   A+LT    
Sbjct: 557 VRRSPGYQAQQNVAIEGEILFGGNYAMTSREERLSDLVNKAGGPTNYAYLRGAKLTRVAN 616

Query: 638 GSE----------------ESSVNHSSVNLDDAL-AGID----------SANVVLSSRDI 670
            SE                E+ ++   + ++D    GID          +A++VL   D+
Sbjct: 617 ASEKKRMGDVIRLMSRQLGEAMIDSLGIRVEDTFTVGIDLEKALSNPKSNADLVLREGDV 676

Query: 671 LTVMTTPDWQENKAVEIRGEVKFPGMYNIRRGETLADVIDRAGGFTQYA 719
           +++        N  V I G V  P   +  +G+ +   +++AGG++  A
Sbjct: 677 ISIP-----NNNNTVTINGAVMVPNTVSYMQGKDVDYYLNQAGGYSDNA 720



 Score =  133 bits (335), Expect = 4e-35
 Identities = 148/642 (23%), Positives = 268/642 (41%), Gaps = 96/642 (14%)

Query: 278 DASGDIRLRSGDVVFIPPVGGLVSITGEVRRPAIYELKRNETVADIVAMAAGVKPGAYPK 337
           D + DIRL  G++  I      +++ GEV +P  Y L    TV   +  A GV      +
Sbjct: 196 DPTSDIRLTLGNIRTIQ-----INVMGEVVQPGTYALSSFSTVFHALYRAGGVSDIGSLR 250

Query: 338 SSSIERYNSNGLRSIVNVDLTSTQGKST-----KAQAGDFIRVKNASGQFEDAITVVGAV 392
           +  + R   N    I  +D+     K       + Q GD + V      ++  + + G V
Sbjct: 251 NVQLVRNGKN----IATIDVYEFIMKGNTQDDIRLQEGDVVIVP----AYDVLVKISGKV 302

Query: 393 VRPGKYQWFDGQKVSDLLPSLWGDLSISADLNYAIIVREVNRYGK------VKVLQFSPS 446
            RP +++    + ++ L+    G     AD  Y   +R V + G+      VK + +S  
Sbjct: 303 KRPMRFEMKKEENLATLIKYAGG---FEADA-YTRSLRVVRQNGEEYEVNTVKDIDYSIY 358

Query: 447 RAIAEKDVTQDLLLAPRDKVMLFNYSDDTQNRYELN---KLVKHRVKKVTSLTGDSLVGN 503
           +      VT + +L      +    +      Y+L+     ++  V +   LTGD+ +  
Sbjct: 359 KMRNGDVVTAEAILNRFTNKLEIRGAVYRPGIYQLSGKLNTIRELVNEAQGLTGDAFLNR 418

Query: 504 DLFKAGFSQLDKMQLSQRSQIGGVVVAKEAPDDKEQLVKGEVNKMLANLFEDKELIKLSG 563
                                   V+ ++  D   ++V+ ++  ++     +  L+K   
Sbjct: 419 -----------------------AVLYRQREDLTSEVVQIDIRSIMDGTSPNLALMK--- 452

Query: 564 SMNRSELLY-PVVAQLAAQGNSDKGTQVVAISGKVRHPGVYPLSQGAKVKDLVIAAGGLV 622
               +++LY P +  L  +GN       V + G+V  P  YP +    ++DL+I AGGL 
Sbjct: 453 ----NDILYIPSIHDLEDRGN-------VTVHGEVAQPDSYPYADNMTLEDLIIQAGGLK 501

Query: 623 EGAYTARAELTTTVIGSEESSVNHS-----SVNLDDALAGIDSANVVLSSRDILTVMTTP 677
           E A T R +++  +     ++ N +     + +L D          +L   D + V  +P
Sbjct: 502 EAASTVRIDVSRRIKNPRSTADNDTIGQMYTFSLKDGFVIDGQPGFILQPYDEVYVRRSP 561

Query: 678 DWQENKAVEIRGEVKFPGMYNIR-RGETLADVIDRAGGFTQYAYLPSSVFVRESVRQQEQ 736
            +Q  + V I GE+ F G Y +  R E L+D++++AGG T YAYL  +   R +   ++ 
Sbjct: 562 GYQAQQNVAIEGEILFGGNYAMTSREERLSDLVNKAGGPTNYAYLRGAKLTRVANASEK- 620

Query: 737 LEIKKLADQLRRDIATRGVSK-DGNVVNYSDAKMMLTDLENIKAVGRLVVDLSAISIGIE 795
              K++ D +R      G +  D   +   D   +  DLE             A+S    
Sbjct: 621 ---KRMGDVIRLMSRQLGEAMIDSLGIRVEDTFTVGIDLEK------------ALSNPKS 665

Query: 796 QADIQLEDQDILYVPSVKQTIAVMGEVQHAATHRFKEGLTLDQYLEMSGGARERADEDRT 855
            AD+ L + D++ +P+   T+ + G V    T  + +G  +D YL  +GG  + A + + 
Sbjct: 666 NADLVLREGDVISIPNNNNTVTINGAVMVPNTVSYMQGKDVDYYLNQAGGYSDNAKKSKK 725

Query: 856 YIIKANGSVLLPNRSMWFSSNTELNPGDTIIVPLDTEYKDNL 897
           +I+  NG V      +  S   ++ PG  IIVP   + K N+
Sbjct: 726 FIVYMNGQV----TKVKGSGKKQIEPGCEIIVPSKAKKKANI 763