Pairwise Alignments

Query, 175 a.a., NusG antitermination factor (RefSeq) from Shewanella loihica PV-4

Subject, 192 a.a., putative transcriptional regulator (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 45.4 bits (106), Expect = 6e-10
 Identities = 37/159 (23%), Positives = 72/159 (45%), Gaps = 9/159 (5%)

Query: 2   KSWYLVYCKPRGETRAQQNLALQQIETYLPTLPQQITKSGKNSVKRLPLFPCYLFIYFDP 61
           K WY+   +   E +  ++L    IE ++P   +    S +  +    L P  +F++ DP
Sbjct: 25  KRWYVALVRMHHEKKVSEHLDKMGIENFVPVQQELHQWSDRRKLVTSVLLPMMVFVHADP 84

Query: 62  LEISVSKIHSTRGVSRIIGCREEMTAIDDAIVHSIRMREAKLLNALQLPSDDLLSGNAEP 121
            E    ++ S   VSR +  R E +    A++   +M   + +      S++ +S N+ P
Sbjct: 85  KE--RMEVLSFSTVSRYMVMRGESS---PAVIPDEQMARFRFMLDY---SEESISMNSSP 136

Query: 122 RLSVGDKVKFVEGPFKELEGIFEEQSGDKRCHILFEIMG 160
            L+ G+KV+ ++GP   L G      G  +  +   ++G
Sbjct: 137 -LARGEKVRVIKGPLTGLVGELVNVDGRSKIAVRLNMLG 174