Pairwise Alignments

Query, 175 a.a., NusG antitermination factor (RefSeq) from Shewanella loihica PV-4

Subject, 190 a.a., putative transcriptional regulator (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 47.0 bits (110), Expect = 2e-10
 Identities = 37/159 (23%), Positives = 70/159 (44%), Gaps = 9/159 (5%)

Query: 2   KSWYLVYCKPRGETRAQQNLALQQIETYLPTLPQQITKSGKNSVKRLPLFPCYLFIYFDP 61
           K W +   +   E +  + L+   IE +LP   +    S +  V    L P  +F++ D 
Sbjct: 25  KRWLVALVRISHEKKTSERLSKMGIENFLPVQQEVHQWSDRRKVVERVLLPMMIFVHVDM 84

Query: 62  LEISVSKIHSTRGVSRIIGCREEMTAIDDAIVHSIRMREAKLLNALQLPSDDLLSGNAEP 121
            E    ++ +   +SR +  R E T    A++   +M   K +      SD+ ++ +  P
Sbjct: 85  YE--QKEVLTLGSISRYMVLRGEST---PAVIPDEQMHRFKFMLDY---SDEAINMSTTP 136

Query: 122 RLSVGDKVKFVEGPFKELEGIFEEQSGDKRCHILFEIMG 160
            LS G K+K ++GP   L+G     +G  +  +   ++G
Sbjct: 137 -LSPGTKIKVIKGPLSGLQGELVTVNGKSKVAVRLTMLG 174