Pairwise Alignments

Query, 175 a.a., NusG antitermination factor (RefSeq) from Shewanella loihica PV-4

Subject, 192 a.a., putative transcriptional regulator (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 42.7 bits (99), Expect = 4e-09
 Identities = 36/159 (22%), Positives = 71/159 (44%), Gaps = 9/159 (5%)

Query: 2   KSWYLVYCKPRGETRAQQNLALQQIETYLPTLPQQITKSGKNSVKRLPLFPCYLFIYFDP 61
           K WY+   +   E +  + L    IE ++P   +    S +  +    L P  +F++ DP
Sbjct: 25  KRWYVALVRMHHEKKVSEYLNKVGIENFVPVQKEIHQWSDRRKLVESVLLPMMVFVHADP 84

Query: 62  LEISVSKIHSTRGVSRIIGCREEMTAIDDAIVHSIRMREAKLLNALQLPSDDLLSGNAEP 121
            E    ++ +   VSR +  R E +    A++   +M   + +      SD+ +  N+ P
Sbjct: 85  KE--RMEVLNFTTVSRYMVMRGESS---PAVIPDDQMARFRFMLDY---SDETVCMNSSP 136

Query: 122 RLSVGDKVKFVEGPFKELEGIFEEQSGDKRCHILFEIMG 160
            L+ G+KV+ ++GP + L G      G  +  +   ++G
Sbjct: 137 -LARGEKVQVIKGPLQGLVGELVNVDGKSKIAVRLNMLG 174