Pairwise Alignments

Query, 175 a.a., NusG antitermination factor (RefSeq) from Shewanella loihica PV-4

Subject, 192 a.a., putative transcriptional regulator (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 44.3 bits (103), Expect = 1e-09
 Identities = 37/160 (23%), Positives = 71/160 (44%), Gaps = 9/160 (5%)

Query: 1   MKSWYLVYCKPRGETRAQQNLALQQIETYLPTLPQQITKSGKNSVKRLPLFPCYLFIYFD 60
           +K WY+ + +   E +  + L    IET++P   +    S +  +    L P  +F++ D
Sbjct: 24  LKRWYVAHVRIHHEKKVAEYLGKMGIETFVPVQQEIHQWSDRRKLVETVLLPMMVFVHAD 83

Query: 61  PLEISVSKIHSTRGVSRIIGCREEMTAIDDAIVHSIRMREAKLLNALQLPSDDLLSGNAE 120
           P E   +   +T  VSR +  R E      A++   +M   + +      S++ +  N  
Sbjct: 84  PKERMAALTLAT--VSRYMVLRGEG---KPAVIPDDQMASFRFMLDY---SEEAICMNYS 135

Query: 121 PRLSVGDKVKFVEGPFKELEGIFEEQSGDKRCHILFEIMG 160
           P L+ G KV+ ++GP   L G      G  +  +  +++G
Sbjct: 136 P-LARGKKVRVIKGPLTGLVGELVALDGKSKIAVRLDMLG 174