Pairwise Alignments

Query, 371 a.a., 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (RefSeq) from Shewanella loihica PV-4

Subject, 376 a.a., flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase from Vibrio cholerae E7946 ATCC 55056

 Score =  622 bits (1604), Expect = 0.0
 Identities = 318/363 (87%), Positives = 339/363 (93%)

Query: 1   MYNESPIIRRPSTRIYVGDVPIGDGAPIAVQSMTNTRTTDVEATVAQIRALENVGADIVR 60
           M +ESPI RRPSTRIYVGDVPIGDGAPIAVQSMTNTRTTDV ATVAQI++LE VGADIVR
Sbjct: 3   MQHESPIKRRPSTRIYVGDVPIGDGAPIAVQSMTNTRTTDVAATVAQIKSLEKVGADIVR 62

Query: 61  VSVPTMDAAEAFKVIKQQTKVPLVADIHFDYRIALKVAEYGVDCLRINPGNIGNEERIRS 120
           VSVPTM+AAEAFK+IKQQ  VPLVADIHFDYRIALKVAEYGVDCLRINPGNIGNE RIRS
Sbjct: 63  VSVPTMEAAEAFKLIKQQVSVPLVADIHFDYRIALKVAEYGVDCLRINPGNIGNEARIRS 122

Query: 121 VVECARDKNIPIRIGVNGGSLEKDLMDKYKEPTPQALLESAMRHVDILDRLNFDQFKVSV 180
           VV+CARDK IPIRIGVNGGSLEKDL  KY EPTP+AL+ESAMRHVDILDRLNFDQFKVSV
Sbjct: 123 VVDCARDKGIPIRIGVNGGSLEKDLQLKYGEPTPEALVESAMRHVDILDRLNFDQFKVSV 182

Query: 181 KASDVFLAVESYRLLAKQIKQPLHLGITEAGGARAGAVKSAVGLGMLLAEGIGDTLRISL 240
           KASDVFLAV+SYRLLAK+I QPLHLGITEAGGARAG+VKSAVGLGMLLAEGIGDTLRISL
Sbjct: 183 KASDVFLAVDSYRLLAKKIDQPLHLGITEAGGARAGSVKSAVGLGMLLAEGIGDTLRISL 242

Query: 241 AADPVEEIKVGFDILKSLRIRSRGINFIACPSCSRQEFDVIATVNELERRLEDVVTPMDV 300
           AADPVEEIKVGFDILKSLRIRSRGINFIACPSCSRQEFDVI TVN LE+RLEDV+TPMDV
Sbjct: 243 AADPVEEIKVGFDILKSLRIRSRGINFIACPSCSRQEFDVIGTVNALEQRLEDVLTPMDV 302

Query: 301 SIIGCVVNGPGEALVSDIGLTGGNRKSGYYDDGVRQKERFDNEHIVDQLEAKIRAKVASV 360
           SIIGCVVNGPGEA VS +GL G N+KS +Y+DGVRQKERFDN+ +V QLEAKIRAK A +
Sbjct: 303 SIIGCVVNGPGEAEVSHLGLAGSNKKSAFYEDGVRQKERFDNDDLVAQLEAKIRAKAARL 362

Query: 361 DAR 363
           D +
Sbjct: 363 DEK 365