Pairwise Alignments

Query, 274 a.a., hypothetical protein (RefSeq) from Shewanella loihica PV-4

Subject, 278 a.a., membrane protein from Burkholderia phytofirmans PsJN

 Score =  142 bits (359), Expect = 6e-39
 Identities = 86/245 (35%), Positives = 135/245 (55%), Gaps = 20/245 (8%)

Query: 41  WRAILKRRMPYFRALPSDLQLQLKRHIQIFIAEKQFVGCQGIEIDDEIRVTIAAQACLLL 100
           W+A L   +P+   L +   ++L+    +F+A+K+F     +E+ D + V IAAQACL +
Sbjct: 28  WQATLDG-LPFLARLAAPDLVRLRELTSLFLAQKEFSTAHELELTDAMTVAIAAQACLPV 86

Query: 101 LNRDTDYYPKLKQILVYPSLFIVNQTQQNGDGTFWERKNILSGESWEFGKVVLSWHTTKE 160
           LN   D Y     ++VYP  F++ +T ++ DG   E +   SGE+WE G VVLSW    E
Sbjct: 87  LNLSLDLYRGWVGVIVYPGEFVIRKTVEDQDGVVHEVEQDASGEAWEGGPVVLSW----E 142

Query: 161 DA--AQPYDGHNVVIHEFAHQLDQEDGHSNGAPILA---HAN-DYQSWSTVMAQEFTRL- 213
           DA      D +NVVIHEFAH++D  +G ++G P L    HA  D Q+W+ V    +    
Sbjct: 143 DAQMTDGSDAYNVVIHEFAHKIDMLNGEADGHPPLMRRWHAPLDSQAWADVFDHAYDHFC 202

Query: 214 --------REDAKWHQPSLFNYYGATNEAEFFAVITETFFERPHEFYQQHQALYQQMSHF 265
                   R  A++ + SL + Y A + +EFFAV +E  F +P  F  ++  LY+ ++ +
Sbjct: 203 ARVDAVLERRWARFERDSLIDPYAADHPSEFFAVCSEALFVQPEAFEAEYPQLYRLLAQY 262

Query: 266 FKLDP 270
           ++ DP
Sbjct: 263 YRQDP 267