Pairwise Alignments

Query, 855 a.a., DNA mismatch repair protein (RefSeq) from Shewanella loihica PV-4

Subject, 862 a.a., DNA mismatch repair protein MutS from Vibrio cholerae E7946 ATCC 55056

 Score = 1125 bits (2909), Expect = 0.0
 Identities = 573/858 (66%), Positives = 681/858 (79%), Gaps = 6/858 (0%)

Query: 2   NAVDTQYLEKHTPMMRQYLTLKAETPDMLLFYRMGDFYELFYDDAKRASELLGISLTARG 61
           NA  ++ L  HTPMM+QYL LKAE PD+LLFYRMGDFYELFYDDAKRASELL ISLT RG
Sbjct: 5   NASPSESLSHHTPMMQQYLRLKAENPDILLFYRMGDFYELFYDDAKRASELLDISLTKRG 64

Query: 62  KSGGDPIPMAGIPYHAVEGYLAKLVQLRVSVAICEQIGDPATTKGPVERKIVRIVTPGTL 121
            S G+PIPMAG+P+HAVEGYLAKLVQ+  SVAICEQIGDPAT+KGPVERK+VRIVTPGT+
Sbjct: 65  ASAGEPIPMAGVPFHAVEGYLAKLVQMGESVAICEQIGDPATSKGPVERKVVRIVTPGTV 124

Query: 122 TDEALLQERQDNLLAAVYHGKVGFGYATLDVSSGRFVVTELASKEALEAELQRTNPAELL 181
           TDEALL ER DNL+AA+YH    FGYAT+D++SGRF ++E  ++E + AELQRT+P ELL
Sbjct: 125 TDEALLSERVDNLIAAIYHHNGRFGYATMDITSGRFQLSEPQTEEEMAAELQRTSPRELL 184

Query: 182 YSEDFSEPALIASLSGKRRRPEWEFDYDTSYKLLLEQFGTKDLYGFGLGEVRLSLQAAGC 241
           + EDFS   L+AS  G RRRP WEF+ DT+ + L +QFGT+DL GFG+ + +L L AAGC
Sbjct: 185 FPEDFSPVHLMASRQGNRRRPIWEFELDTAKQQLNQQFGTRDLVGFGVEQAKLGLCAAGC 244

Query: 242 LIQYVKDTQRTALPHINAITRFNQCDSIVLDAATRKNLELTRNLQGGSDNTLASVLDNTA 301
           LIQYVKDTQRTALPHI ++T   Q  S++LDAATR+NLELT NL GG+DNTLA VLD+ A
Sbjct: 245 LIQYVKDTQRTALPHIRSLTWDRQDQSVILDAATRRNLELTHNLAGGTDNTLAEVLDHCA 304

Query: 302 TPMGSRMLQRWIHEPLRNHNIIRARHDAIDELLDNGYHESLHEQLKALGDIERITARLAI 361
           TPMGSRML+RWIH+P+R++  +  R DAI EL +   +  LH  LK +GDIERI ARLA+
Sbjct: 305 TPMGSRMLKRWIHQPMRDNATLNQRLDAITELKETALYGELHPVLKQIGDIERILARLAL 364

Query: 362 RSARPRDFARLRQALALLPEIQQQLADCNSPHLKALSSHLGDFPEEHALLSRAIVDNPPM 421
           RSARPRD ARLR A+  LPE+   +++   PHL  L +H     E   LL RAI +NPP+
Sbjct: 365 RSARPRDLARLRHAMQQLPELHSVMSELKQPHLTELRTHAEPMDELCDLLERAIKENPPV 424

Query: 422 LIRDGGVIKEGYHNELDEWRKLSQGATDYLAELEAREKAATGASTLKVGYNRVHGYYIEV 481
           +IRDGGVI +GY  ELDEWR L+ GAT++L  LEA E+   G  TLKVGYN VHG+YI+V
Sbjct: 425 VIRDGGVIADGYSAELDEWRDLANGATEFLERLEAEERDRHGIDTLKVGYNNVHGFYIQV 484

Query: 482 SRRESDLVPMSYQRRQTLKNTERYIVAELKEHEEKVLSSQGKALALEKQLWEELFDLLMP 541
           SR +S LVP  Y RRQTLKN ERYI+ ELK+HE+KVL+S+ +ALALEKQLWEELFDLLMP
Sbjct: 485 SRGQSHLVPPHYVRRQTLKNAERYIIEELKQHEDKVLNSKSRALALEKQLWEELFDLLMP 544

Query: 542 RLHELQAFARAAAELDVITNFAERAEQLDYHRPELTAQSGIHIEAGRHPVVERVSQTPFI 601
            L +LQ  A + A+LDV+ N AERAE L+Y RP L  ++GIHI+ GRHPVVERV   PFI
Sbjct: 545 HLEQLQQLAASVAQLDVLQNLAERAENLEYCRPTLVQEAGIHIQGGRHPVVERVMNEPFI 604

Query: 602 ANPVSLNPARRMLIVTGPNMGGKSTYMRQVALITLMAHIGSFVPAQKAAIGPVDRIFTRI 661
           ANP+ LNP RRMLI+TGPNMGGKSTYMRQ ALI LMAHIGS+VPA+ A+IGP+DRIFTRI
Sbjct: 605 ANPIELNPQRRMLIITGPNMGGKSTYMRQTALIALMAHIGSYVPAESASIGPLDRIFTRI 664

Query: 662 GAADDLASGRSTFMVEMTETANILHNATPESLVLMDEIGRGTSTYDGLSLAWSAAEHLAQ 721
           GA+DDLASGRSTFMVEMTETANILHNAT  SLVLMDEIGRGTSTYDGLSLAW++AE LA+
Sbjct: 665 GASDDLASGRSTFMVEMTETANILHNATRNSLVLMDEIGRGTSTYDGLSLAWASAEWLAK 724

Query: 722 NLKSMTLFATHYFELTQLPDQMENVANVHLDAIEHDDTIAFMHAVQEGAASKSYGLQVAA 781
            + +MTLFATHYFELT+LP+ + ++ANVHLDA+EH D IAFMHAVQEGAASKSYGL VA 
Sbjct: 725 EIGAMTLFATHYFELTELPNVLPHLANVHLDAVEHGDGIAFMHAVQEGAASKSYGLAVAG 784

Query: 782 LAGVPAKVVQAAKHKLHHLE---SRDREEELPELRQA--QLSMTMPETSKALDRLDTIDP 836
           LAGVP  V++ A+ KL  LE   S+  E   P       QLS+ +PE S     L  +DP
Sbjct: 785 LAGVPKPVIKNARAKLQQLELLSSQPAETRKPSRVDIANQLSL-IPEPSAVEQALAGVDP 843

Query: 837 DSLTPRQALDLLYELKQL 854
           D LTPRQALD+LY+LK+L
Sbjct: 844 DQLTPRQALDMLYQLKKL 861