Pairwise Alignments

Query, 855 a.a., DNA mismatch repair protein (RefSeq) from Shewanella loihica PV-4

Subject, 882 a.a., DNA mismatch repair protein from Synechococcus elongatus PCC 7942

 Score =  581 bits (1498), Expect = e-170
 Identities = 332/821 (40%), Positives = 496/821 (60%), Gaps = 28/821 (3%)

Query: 10  EKHTPMMRQYLTLKAETPDMLLFYRMGDFYELFYDDAKRASELLGISLTAR--GKSGGDP 67
           ++ TPMM+ Y  +K +    +L YRMGDF+E F+ DA   +  L + LT++  GK  G  
Sbjct: 26  DRLTPMMQHYAEVKDQHLQQILLYRMGDFFECFFQDAIVVARELELVLTSKEAGKEVGR- 84

Query: 68  IPMAGIPYHAVEGYLAKLVQLRVSVAICEQIGDPATTKGP-VERKIVRIVTPGTLTDEAL 126
           +PMAGIPYHA++ Y ++LV+   ++AIC+Q+   A  +GP V R+I RI+TPGT+ +E +
Sbjct: 85  VPMAGIPYHALDRYASQLVEKGYAIAICDQVETAAQAQGPLVRREITRIITPGTILEEGM 144

Query: 127 LQERQDNLLAAVYHGKVGFGYATLDVSSGRFVVTELASKEALEAELQRTNPAELLYSEDF 186
           LQ R++N LAAV      +G A  D S+G +  ++    E L  EL R  P+E+L+    
Sbjct: 145 LQARRNNFLAAVVIAGEHWGLAYADSSTGDYWTSQSTGLEGLTQELYRLQPSEVLFPS-- 202

Query: 187 SEPALIASLSGKRRRPE-----------------WEFDYDTSYKLLLEQFGTKDLYGFGL 229
           + P L   L   + +P+                   F+   + + LLE F  + L G G 
Sbjct: 203 AAPDLAGLLRPGQSKPQQIPDCLPDSFCYALRSPMPFELHEARQRLLEHFQLRSLEGCGC 262

Query: 230 GEVRLSLQAAGCLIQYVKDTQRTALPHINAITRFNQCDSIVLDAATRKNLELTRNLQGGS 289
            ++ L+++AAG L+ Y+ +TQR +L  +     ++  + ++LD  TR+NLE+T+  + GS
Sbjct: 263 EQLPLAIRAAGGLLDYLGETQRESLAPLQKPRTYSLSEFLILDQQTRRNLEITQTQRDGS 322

Query: 290 -DNTLASVLDNTATPMGSRMLQRWIHEPLRNHNIIRARHDAIDELLDNG-YHESLHEQLK 347
              +L   LD T T MG R+L+RW+ +PL N   IR R  AI EL  +G   + L   L+
Sbjct: 323 FHGSLLWALDRTMTSMGGRLLRRWLLQPLLNPEAIRNRQAAIQELCQDGRLRQDLRSLLQ 382

Query: 348 ALGDIERITARLAIRSARPRDFARLRQALALLPEIQQQLADCNSPHLKALSSHLGDFPEE 407
            + D+ER++ R    +A  RD   L ++L  LPE+ Q L+   SP L  L     +  + 
Sbjct: 383 KIYDLERLSGRAGAGTANARDLLALAESLLRLPELAQLLSRAQSPLLAQLQQVPPELEQL 442

Query: 408 HALLSRAIVDNPPMLIRDGGVIKEGYHNELDEWRKLSQGATDYLAELEAREKAATGASTL 467
              L + +V++PP+ + +GG+I+ G    LDE R+  +    ++A LEA E+ ATG ++L
Sbjct: 443 GDRLQQHLVESPPLQLTEGGLIRSGVAIALDELRQQVESDRQWIASLEASERTATGINSL 502

Query: 468 KVGYNRVHGYYIEVSRRESDLVPMSYQRRQTLKNTERYIVAELKEHEEKVLSSQGKALAL 527
           KVGY++  GY+I +SR ++D VP  Y RRQTL N ER+I  +LKE E ++L++Q     L
Sbjct: 503 KVGYSKTFGYFISLSRSKADQVPDHYIRRQTLTNEERFITPDLKERESRILNAQTDLNQL 562

Query: 528 EKQLWEELFDLLMPRLHELQAFARAAAELDVITNFAERAEQLDYHRPELTAQSGIHIEAG 587
           E  L+  L   +   +  ++A A A A  DV+   AE A   +Y  PE+     + I+ G
Sbjct: 563 EYDLFVGLRSEVSHHVETIRAIATAVAAADVLAALAEVAVYQNYCCPEIRDDRQLAIQDG 622

Query: 588 RHPVVERVSQTPF-IANPVSLNPARR--MLIVTGPNMGGKSTYMRQVALITLMAHIGSFV 644
           RHPVVE+   + F + N   L   R   ++++TGPN  GKS Y+RQV LI L+A IGSFV
Sbjct: 623 RHPVVEQALPSGFYVPNSCGLGSDRGPDLIVLTGPNASGKSCYLRQVGLIQLLAQIGSFV 682

Query: 645 PAQKAAIGPVDRIFTRIGAADDLASGRSTFMVEMTETANILHNATPESLVLMDEIGRGTS 704
           PA+ A +G  DRIFTR+GA DDLA+G+STFMVEM ETANIL++AT  SLVL+DEIGRGT+
Sbjct: 683 PAKNAQVGICDRIFTRVGAVDDLATGQSTFMVEMNETANILNHATARSLVLLDEIGRGTA 742

Query: 705 TYDGLSLAWSAAEHLAQNLKSMTLFATHYFELTQLPDQMENVANVHLDAIEHDDTIAFMH 764
           T+DGLS+AW+ AE+LA+ +++ T+FATHY EL +L   ++NVAN  +   E  D I F+H
Sbjct: 743 TFDGLSIAWAVAEYLAREIQARTIFATHYHELNELSGLLKNVANFQVTVKELPDRIVFLH 802

Query: 765 AVQEGAASKSYGLQVAALAGVPAKVVQAAKHKLHHLESRDR 805
            VQ G A +SYG++ A LAG+P++V+  A+  +  +E   R
Sbjct: 803 QVQPGGADRSYGIEAARLAGLPSEVIDRAREVMSRIEKHSR 843