Pairwise Alignments

Query, 601 a.a., DNA primase (RefSeq) from Shewanella loihica PV-4

Subject, 647 a.a., DNA primase, catalytic core from Pseudomonas stutzeri RCH2

 Score =  443 bits (1139), Expect = e-128
 Identities = 263/630 (41%), Positives = 367/630 (58%), Gaps = 63/630 (10%)

Query: 29  IPREFINELVARTDIVDLIDAKVPLKKAGKNHSACCPFHSEKSPSFTVSRDKQFYHCFGC 88
           IP+ FI++L+ R+DIV+++ +++ LKKAGKN+SA CPFH EK+PSF+VS DKQFY+CFGC
Sbjct: 5   IPQSFIDDLLNRSDIVEVVGSRIQLKKAGKNYSALCPFHKEKTPSFSVSPDKQFYYCFGC 64

Query: 89  GAHGNAIDFVMEYDRLDFVDAIEELAGRLGLEVPREQGTGKRRD-EGLSRDLYQLMEEAS 147
           GA GNA+ FVM++D+LDF  A+EELA R G+EVP E    K +  + +   LY L+  A+
Sbjct: 65  GAGGNALGFVMDHDQLDFPQAVEELAKRAGMEVPHEDSGRKHKPRQPVDSPLYPLLAAAA 124

Query: 148 RYFQSQLKQHTDKQKVLDYLAHRGLSDEVIEHFNIGFAPDGWDGLLGRYRQNQDAQDKLL 207
            Y++  LK H  ++  ++YL  RGLS  +   F +GFAP GWD L+     +   Q  L+
Sbjct: 125 DYYRQALKSHPTRKSAVEYLKGRGLSGVIARDFGLGFAPPGWDNLMKHLGGDALQQKALI 184

Query: 208 TAGMVIEN-DSGKRYDRFRDRLMFPIRDRRGRVIGFGGRVLGDGTPKYLNSPETPIFHKG 266
            AG++IEN ++GKRYDRFRDR+MFPIRD RGRVI FGGRVLGD  PKYLNSPETP+FHKG
Sbjct: 185 DAGLLIENAENGKRYDRFRDRVMFPIRDSRGRVIAFGGRVLGDDKPKYLNSPETPVFHKG 244

Query: 267 YELYGLYELKQRHRDPSQILIVEGYMDVVALTQFGVDYAVASLGTSTTADQFQLLLRSAK 326
            ELYGLYE +Q +RD  +I++VEGYMDV+AL Q G+  AVA+LGT+T+ +  + L R   
Sbjct: 245 QELYGLYEARQTNRDLDEIMVVEGYMDVIALAQQGLRNAVATLGTATSEEHLKRLFRIVP 304

Query: 327 EVICCYDGDKAGTEAAWRALETALPLLKPGDQVKFMFLPQGEDPDSLVRQIGKPAFEQLI 386
            V+ C+DGD AG +AAWRALE  LP L+ G + +F+FLP GEDPD+LVR  G  AF   I
Sbjct: 305 SVLFCFDGDAAGRKAAWRALEATLPNLQDGRRARFLFLPDGEDPDTLVRAEGTDAFRARI 364

Query: 387 AE-AKLLPEFLFDTLAS----RYGTDKGTLAKQAMSLIEKVQDTVLQSLLLENLA----- 436
            + ++ L ++ F  L+     R    K  LA  A  LIEK+  + L++L+ + LA     
Sbjct: 365 QQHSQPLADYFFQQLSDEADPRSLEGKAHLATLAAPLIEKIPGSNLRTLMRQRLAEITGL 424

Query: 437 ----------------------------YKLGMNSAEE---------LQRKLGFK--RID 457
                                       Y+ G + AE           Q++ G K  + D
Sbjct: 425 NGEALQHMAAAPAPSPGNSTPEYDDSAYYETGAHYAETDYFEPPETPKQQRSGKKEWKKD 484

Query: 458 ANKPLQNKALKGRGT--------PLRLAIALLVQHPHLGNNLPVQPALKHIKMAGIDLLS 509
             K  Q    K RG         P    +  L+ HP L   +               LL 
Sbjct: 485 WKKSGQRPDFKPRGPRTPATVEPPTLTTLRTLLHHPELAQKVEDVSHFAAEDDTYAQLLV 544

Query: 510 LLLDRTRAE-KVNSAQLLEQFRGDDQLDTLKKLAQWEHQVADENLQQEFKKALIWLNNQY 568
            LL   +   K+ S QL+ ++ G DQ   L+ LA+ E  ++ +NL+Q+F   +  L  + 
Sbjct: 545 ALLGALQKNPKLRSLQLIARWHGTDQGRLLRALAEKEWLISADNLEQQFFDTINSLAARQ 604

Query: 569 IEQRYQELSLKQHH---TKEERMQLKKLIA 595
            E+R + L  K      + EE+ QL+ L++
Sbjct: 605 RERRLENLLRKARQGELSAEEKDQLRNLLS 634