Pairwise Alignments

Query, 601 a.a., DNA primase (RefSeq) from Shewanella loihica PV-4

Subject, 620 a.a., DNA primase (NCBI) from Rhodospirillum rubrum S1H

 Score =  308 bits (790), Expect = 3e-88
 Identities = 165/408 (40%), Positives = 241/408 (59%), Gaps = 10/408 (2%)

Query: 27  MAIPREFINELVARTDIVDLIDAKVPLKKAGKNHSACCPFHSEKSPSFTVSRDKQFYHCF 86
           MA+P  F++EL AR  +  ++  +V L + G+     CPFH+EKSPSFTV+ +K F+HCF
Sbjct: 1   MALPNAFLDELRARLTLSSVVGRRVKLARKGREFLGLCPFHNEKSPSFTVNDEKGFFHCF 60

Query: 87  GCGAHGNAIDFVMEYDRLDFVDAIEELAGRLGLEVPREQGTGKRRDEGLSRDLY-QLMEE 145
           GCGAHG+ I F M    + F +A+E L+   GLE+PRE  T + RD       + ++ME 
Sbjct: 61  GCGAHGDVIGFEMRAANIAFREAVERLSAEAGLEMPRE--TAEDRDRSRQAASHREIMEM 118

Query: 146 ASRYFQSQLKQHTDKQKVLDYLAHRGLSDEVIEHFNIGFAPDGWDGLLGRYRQNQDAQDK 205
           A  ++Q  L+   + +  ++YL  RGL D  +  F +GF+P G        R+  D Q  
Sbjct: 119 ACAFYQKALRL-PEGRGAMEYLRGRGLDDATLARFRLGFSPQGGALKAALAREGVDEQ-A 176

Query: 206 LLTAGMVIENDSGK-RYDRFRDRLMFPIRDRRGRVIGFGGRVLGDGTPKYLNSPETPIFH 264
           ++  G+++ +D G+  +D FR R+MFPI D  GRV+ FG R+LG+G PKYLNSP+TP+FH
Sbjct: 177 MVDLGLILRSDDGRPAFDYFRGRVMFPIGDPAGRVVAFGARILGEGQPKYLNSPDTPLFH 236

Query: 265 KGYELYGLYELKQRHRDPSQILIVEGYMDVVALTQFGVDYAVASLGTSTTADQFQLLLRS 324
           KG+ LY L   ++  R    I++ EGYMDV+AL + G+ +AVA LGT+ T  Q + L R+
Sbjct: 237 KGHSLYNLGPAREAARQSGAIIVAEGYMDVIALARAGLGWAVAPLGTALTEAQMEALWRT 296

Query: 325 AKEVICCYDGDKAGTEAAWRALETALPLLKPGDQVKFMFLPQGEDPDSLVRQIGKPAFEQ 384
             E + C+DGD AG  AA RA+E ALPL+ PG  ++F  LP G DPD L+R+ G  A  Q
Sbjct: 297 IPEPVLCFDGDGAGRRAAARAMERALPLIGPGRSLRFALLPGGRDPDDLLREGGPVALRQ 356

Query: 385 LIAEAKLLPEFLFDTLASRYG----TDKGTLAKQAMSLIEKVQDTVLQ 428
           ++  A    E  +  L+          +  L     + + K+ D  LQ
Sbjct: 357 VLDVAVPFSEMAWRELSEGQALTTPEQRAALEAAIDAFVAKIADRSLQ 404