Pairwise Alignments

Query, 601 a.a., DNA primase (RefSeq) from Shewanella loihica PV-4

Subject, 575 a.a., protein containing DNA primase, DnaG/TOPRIM from Marinobacter adhaerens HP15

 Score =  357 bits (917), Expect = e-103
 Identities = 186/407 (45%), Positives = 261/407 (64%), Gaps = 10/407 (2%)

Query: 29  IPREFINELVARTDIVDLIDAKVPLKKAGKNHSACCPFHSEKSPSFTVSRDKQFYHCFGC 88
           IP++F+  L+ R D+ +LI +++ LKKAG N+ ACCPFH EK+PSF V  DK FYHCFGC
Sbjct: 5   IPQQFVENLLDRIDLAELIGSRITLKKAGANYKACCPFHDEKTPSFNVRPDKGFYHCFGC 64

Query: 89  GAHGNAIDFVMEYDRLDFVDAIEELAGRLGLEVPREQGTGKRRDEGLSRDLYQLMEEASR 148
           GAHG+AI FV E++ L F +A+EELA R+GLEVP ++   +   +  +R L   ++ ASR
Sbjct: 65  GAHGDAISFVREFEGLGFTEAVEELAKRVGLEVPYDRAAKQEIQQ--ARTLTDALDFASR 122

Query: 149 YFQSQLKQHTDKQKVLDYLAHRGLSDEVIEHFNIGFAPDGWDGLLGRYRQNQDAQDKLLT 208
           ++QS LK         DYL  RGL + +IE + +G+AP     L      ++D Q  L+ 
Sbjct: 123 FYQSALKGQQGAY-ARDYLQQRGLDNAIIEQYQVGYAPSTGTALFDV--ASKDLQGPLIE 179

Query: 209 AGMVIENDSGKRYDRFRDRLMFPIRDRRGRVIGFGGRVLGDGTPKYLNSPETPIFHKGYE 268
            G V +   GK  D FR+R+MFPIR+ RGR + FGGR LGD   KY+NSPE+ +FHK  E
Sbjct: 180 TGTVSDK-YGKPRDLFRNRVMFPIRNSRGRTVAFGGRTLGDDKAKYINSPESDVFHKSRE 238

Query: 269 LYGLYELKQRHRDPSQILIVEGYMDVVALTQFGVDYAVASLGTSTTADQFQLLLRSAKEV 328
           +YGL+E KQ  R   ++L+VEGYMDV+AL Q G+ YAVA+LGT+T  D    LL+  + +
Sbjct: 239 IYGLFEAKQAIRQLDKLLVVEGYMDVIALAQHGIHYAVATLGTATNQDSLTALLKQVRHI 298

Query: 329 ICCYDGDKAGTEAAWRALETALPLLKPGDQVKFMFLPQGEDPDSLVRQIGKPAFEQLIAE 388
           + C+DGD+AG  AA RA+E AL L+  G  ++F+ LPQGEDPD+LVR+ G  AF++ I  
Sbjct: 299 VFCFDGDQAGFRAADRAMENALELMADGLHLQFLMLPQGEDPDTLVRKEGPEAFQKRIEG 358

Query: 389 AKLLPEFLFDT----LASRYGTDKGTLAKQAMSLIEKVQDTVLQSLL 431
           A  L  +LFD     L  +    +G L  +   L+ K+  + L+  +
Sbjct: 359 ATPLSRYLFDRQSEGLDLQLPEHRGELRARVEPLLNKMPRSTLRDAM 405