Pairwise Alignments

Query, 1171 a.a., multi-sensor hybrid histidine kinase (RefSeq) from Shewanella loihica PV-4

Subject, 927 a.a., two-component sensor histidine kinase BarA from Vibrio cholerae E7946 ATCC 55056

 Score =  278 bits (711), Expect = 1e-78
 Identities = 233/763 (30%), Positives = 383/763 (50%), Gaps = 61/763 (7%)

Query: 418  PEVDLAALVSKANQGNKTLNLDA----ELPLNEGRIVDLYVSVSPILGENKHALGVAIII 473
            P   +  +V +  +G+  + ++     EL   +  I  + VS+S    E +H++  A   
Sbjct: 203  PITHMKNMVDRIRRGHLDVRIEGKMHGELDTLKKGINAMAVSLSEYHVEMQHSIDQA--- 259

Query: 474  RDVSIEKQAAKKIQLVNAELEKKVAIRTQELQKASLVKSSFISNISHEMRTPLNGIVGTL 533
               S  ++  +++++ N EL+    I  +  Q+A+ VKS F++N+SHE+RTPLNG++G  
Sbjct: 260  --TSDLRETLEQLEIQNVELD----IAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFT 313

Query: 534  NLVRKDSLTERQARYLEMAEVSVNTLSALINDVLDLSKIEAGKLDLDMSSFNPLNLIESV 593
              + K  LT  QA YL+  E S N L  +IND+LD SK+EAGKL L+   F    ++E V
Sbjct: 314  RQMLKTQLTNSQADYLQTIEKSANNLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEV 373

Query: 594  CSSMAVKAQEKGIEFVIDVVDLRCQSVDSDPHRITQILTNLINNAIKFTDHGYIKVRAHS 653
             +  A  A EKG+E  + +     + V  DP RI Q+LTNL+ N+IKFT+ G I V    
Sbjct: 374  VNLQATSAHEKGLEITLKIDPKIPRGVVGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEM 433

Query: 654  RLRETGELEFICEVSDTGIGIAEENQAKLFTAFSQATSSIAAQYGGTGLGLSICKELSEL 713
            R      ++    V DTGIGI+E  QA+LF AFSQA +SI+ +YGGTGLGL I ++L   
Sbjct: 434  RALRDDVIDLQFMVRDTGIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSH 493

Query: 714  LNGKMSFESHKGQGSCFIFTMVLHQGEFKL---MAPEALLHEMTCSVLLVNEAQQAC--V 768
            + G++S  S   QGS F FT+ LH  E  L      ++L H     +LL+    QA   V
Sbjct: 494  MGGEISLTSRLHQGSTFWFTLRLHTTELPLNDGYNADSLNHR---HLLLIEPNMQAAAIV 550

Query: 769  EAAIARLGGKLLPGSPIRDWLNQDAPVPD-VLPHVLIVEQRHSLLTDLDSLWPTLTATHK 827
            +  + + G ++      R  + ++  V D VL ++   ++ +  L +L  +   L  TH 
Sbjct: 551  QQTLVQSGLEV----TYRSAIPEEQHVYDYVLLNLAPSKETNPTLVEL-WVQRALAMTHN 605

Query: 828  RLPRVLAFQKSADGNKALRNIELEYLNNPLLFSEFMQKFGAPKASSGVENVHPQV-TPII 886
             +  V +  + A  ++ ++   ++ ++ PL   + +Q   A +         PQ+    +
Sbjct: 606  VIVGVPS-TELALADQLMQRYPVKCISKPLSRKKLLQTLAAQQ---------PQLANTSL 655

Query: 887  SEEEAHRIKGARVLVVDDNEINIEVALGILSELPLEFVRAINGQEALTKLRECEQEGLGV 946
             + +A ++    V+ VDDN  N+++   +L E     V   +GQEA+ + +  + +    
Sbjct: 656  PKPQADKLP-LCVMAVDDNPANLKLITALLQERVEYVVSCTSGQEAIEQAQSRQFD---- 710

Query: 947  HCILMDCQMPILNGYDCTRAIRAGEAGEAFVDTPIIAMTASAMMGERDKCIEAGMNDYIT 1006
              ILMD QMP ++G    +AI+     + + DTP+IA+TA AM GERD+ ++AGM+DY+T
Sbjct: 711  -IILMDIQMPHMDGVTACKAIK---QLKGYRDTPVIAVTAHAMAGERDRLLKAGMDDYLT 766

Query: 1007 KPIVAERLQEKVTDW--------LISVCEFGDLPTLVEAAPHEEIQVKDEDYVWNRQLAL 1058
            KPI    LQ+ +  W        +  V        +  A P        E+ + +  +AL
Sbjct: 767  KPIEEHILQQVLVHWSPHTRSKQVAKVTPPDGAAVISNALPSSP---PAEEAIIDWPVAL 823

Query: 1059 SRLMNNEVLFAEICQMYHDTSPAQVGELEEAIAAKDYEKVRQLS--HGLKGLSSSIGAIQ 1116
             +  N E L  E+  M  D        +  A+  ++Y     L   H L G  S  G  +
Sbjct: 824  RQSANKEDLAKEMLGMLVDYLREVETVVNTALEDEEYPASDLLHHIHKLHGSCSYSGVPR 883

Query: 1117 LQEQFLSLEMEAKM-KNCDKLNLLFGVIKPCYAKLMERLQETL 1158
            L++   SLE   +   + D+L      ++   AK++E  ++ L
Sbjct: 884  LRKICASLEQALRNGASIDELEPELFELQDEMAKVLEASRDYL 926