Pairwise Alignments

Query, 816 a.a., response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq) from Shewanella loihica PV-4

Subject, 1281 a.a., PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein from Dechlorosoma suillum PS

 Score =  367 bits (943), Expect = e-105
 Identities = 216/581 (37%), Positives = 330/581 (56%), Gaps = 11/581 (1%)

Query: 229  LTIRKQDGHVAGMLLTLTDITSIKRAKSQLDTENRRLKIMLNAIGDAVIATDSEAMITFM 288
            L IR+ +      ++  TDIT+  RA+++L       K+  N+  +A++  D    I  +
Sbjct: 695  LEIRQVNLGDGSTIIIYTDITARHRAEAELKLAE---KVFANS-PEAIMICDQGNRIISV 750

Query: 289  NPIAERLTGWVCRDAIGLHIEQVMDLCDAKTKYRSPNPVTIAIKEKRNVAMALNCQLNSL 348
            N     +TG+   + +G     +      K  YR    +      +   A A        
Sbjct: 751  NRAFCDITGYAQEEVLGQDPRMLASGRHDKDFYRQMWEIL-----RDTGAWAGEIWDRRK 805

Query: 349  DGTTFQIEDSAAPITDSE-GKVTGGIIVFHDCSESVAMSLKMSHLANHDQLTDLPNRILL 407
            +G  +    +   + D++ G +T  I +F D +E      ++ HLA+HD LT LPNR  L
Sbjct: 806  NGEIYPKWMTINAVHDTQSGALTHYITLFSDITERKETEARIHHLAHHDPLTGLPNRFTL 865

Query: 408  HDRINHACAVADSYDKSVALMLIDIDHFKYLNDSLGHSYGDQVIKQVAKRLQSLIDPNAT 467
              R+  + A A  +   VA+M +D+D FK +NDSLGH+ GD ++ ++A RL+S +  + T
Sbjct: 866  EARLEQSLADARRHGHKVAVMFMDLDRFKTINDSLGHAVGDSLLMEIAHRLRSAVRESDT 925

Query: 468  LGRIGGDEFVLLLPSLTATSQVDSIATDIVRSLNTPFRIDGQEYTLSVSVGISIYPSDAL 527
            + R+GGDEFV++LP +   +    +A  I+  +    R+   E   S S+GIS+YP D  
Sbjct: 926  VARLGGDEFVVVLPDVEGANDAAHVAGKIIEDVARSLRVGAHELHTSASIGISLYPDDGE 985

Query: 528  RAEELMTHVDAAMYRAKDLGRNRFCYFSEDLEQELTKRHELVTLLRTAIDTEAIEVYYQP 587
                +M + D AMY AK +GRN F +F+  + +  T+R EL   LR A+  + +E+++QP
Sbjct: 986  TVPTVMQNADTAMYHAKAIGRNNFQFFASAMNRAATERLELERKLRQAMVNDELELHFQP 1045

Query: 588  KVDLKTKEIIGAEALARLYDPSGKLISPLDFIPLAEETGLIHQLGEIILKQSCMAAKAWQ 647
            +  L    + G EAL R   P   LI P  FIP+AEETGLI  +G+ +L+ +C   KAW 
Sbjct: 1046 QFALAADRVTGVEALLRWRHPEDGLIPPDRFIPIAEETGLIVGIGDWVLQAACRQLKAWL 1105

Query: 648  KRG-RPLQIAVNIAAKQFTNPEFCDSVAKVLELTGLDSSFLELEVTESSLMYDFDEALNV 706
             +G  PL++AVN++ +Q    EF   VA +L+ TGL +  LELE+TES +M   +EA+  
Sbjct: 1106 DQGLPPLRMAVNLSTRQLKEKEFPSRVAAILQETGLPAVLLELEITESGVMERPEEAITT 1165

Query: 707  LNTLSSLGLSIAIDDFGTGYSSLSYLKFFPVNTLKIDQSFVKDMLGDEQSLDIVKAVIHL 766
            L  L+ +G+++AIDDFGTGYSSLSYLK FP++ LKID+SFV+D+  D     I +  I L
Sbjct: 1166 LQALNDMGVTLAIDDFGTGYSSLSYLKLFPIDRLKIDRSFVRDIERDPDDAAIARGTIAL 1225

Query: 767  AKSLKLKLIAEGIEDAEQLQKLVALECEQGQGYMFSKPLPL 807
            A SL L+++AEG+E + QL  L A  C++ QGY FS+PLPL
Sbjct: 1226 AHSLGLEVVAEGVETSAQLDMLAADGCDEVQGYFFSRPLPL 1266



 Score = 35.8 bits (81), Expect = 2e-05
 Identities = 44/175 (25%), Positives = 70/175 (40%), Gaps = 21/175 (12%)

Query: 130 KRQEQTIIEARQDMQALVNQIPSYISYWSKDLLNRFHNDYNGRWFGTIPQDAL--GKPAS 187
           K  E+        ++A++  +P  IS + + L  +  N+      G +P +AL  G P  
Sbjct: 459 KLAEEEYRRQSTQLRAVLQNMPQGISVFDEHLRLQLWNEGMREVLG-LPAEALYRGVPFE 517

Query: 188 SLL-------------PKALYEEILARIASNKPKHQFEVALEDTPGKIDYAQAHLTIRKQ 234
            L+             P+   +E  A     KP H+FE    D  G+    Q        
Sbjct: 518 DLVRYPAQRGEYGPGDPEQHVQERKALAMQFKP-HRFERTRLD--GRTTLVQGEPLF--D 572

Query: 235 DGHVAGMLLTLTDITSIKRAKSQLDTENRRLKIMLNAIGDAVIATDSEAMITFMN 289
           DG + G + T TDI+  KR +  L  +N  L+ +L  + D V   D E  +   N
Sbjct: 573 DGQLTGFITTYTDISESKRNEQALRNQNAILQNILENLPDGVSLYDPEQRMIACN 627