Pairwise Alignments

Query, 816 a.a., response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq) from Shewanella loihica PV-4

Subject, 1422 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  363 bits (932), Expect = e-104
 Identities = 220/598 (36%), Positives = 337/598 (56%), Gaps = 33/598 (5%)

Query: 226  QAHLTIRKQDGHVAGMLLTLTDITSIKRAKSQLDTENRRLKIMLNAIGDAVIATDSEAMI 285
            +A +  R    +   M  T+ +I+  K+ + QL    R  +  +  I + +   DSE   
Sbjct: 835  RAKIVERDDKDNALRMTGTIKNISQFKQKEEQL----RLFEKAIENISEGMFILDSEYRF 890

Query: 286  TFMNPIAERLTGWVCRDAIGLHIEQVMDLCDAKTKYRSPNPVTIAIKEKRNVAMALNCQL 345
              +N    R++     D IG  +   +        Y       I    K+    A   + 
Sbjct: 891  VEVNEACCRISQRNRSDFIGNLLTFEL--------YPESFSNQIRTMLKQQGRWASEVEA 942

Query: 346  NSLDGTTFQIEDSAAPITDSEGKVTGGIIVFHDCSESVAMSLKMSHLANHDQLTDLPNRI 405
            N  D + F +E +   I D  G+++  + VF D S       ++  L N+D LT LPNR 
Sbjct: 943  NRGDNSHFHMELTIDAIYDELGELSHYVGVFSDISRRKQQEEELRKLTNNDLLTGLPNRS 1002

Query: 406  --------LLHDRINHACAVADSYDKSVALMLIDIDHFKYLNDSLGHSYGDQVIKQVAKR 457
                    L++  INHA            LM++D+D+FK +NDSLGH  GD+++K V+ R
Sbjct: 1003 NLQVTLGNLVNKEINHA------------LMVLDLDNFKRINDSLGHQVGDKLLKLVSVR 1050

Query: 458  LQSLIDPNATLGRIGGDEFVLLLPSLTATSQVDSIATDIVRSLNTPFRIDGQEYTLSVSV 517
            ++S +  N  + R+GGDEF ++L   +      +IA  IV + NT + ID ++  L VSV
Sbjct: 1051 IKSSVPKNTNIYRLGGDEFAIVLDKTSDILASAAIAGRIVDAFNTVYEIDNEQLVLGVSV 1110

Query: 518  GISIYPSDALRAEELMTHVDAAMYRAKDLGRNRFCYFSEDLEQELTKRHELVTLLRTAID 577
            GI +YP D    + L+   D AMY AK  G N + ++SE L +   K+ E   L+R  + 
Sbjct: 1111 GIVLYPDDEQNEQALLRKADIAMYHAKSAGGNCYQFYSESLNEHAIKQLETENLIREGLK 1170

Query: 578  TEAIEVYYQPKVDLKTKEIIGAEALARLYDPSGKLISPLDFIPLAEETGLIHQLGEIILK 637
             +  EVYYQPKVDLK   + G EAL RL  P+  LI P DFIPLAEE GLI ++GEI+L+
Sbjct: 1171 EDLFEVYYQPKVDLKHGHVAGMEALVRLNHPTLGLIPPNDFIPLAEENGLIVEIGEIVLR 1230

Query: 638  QSCMAAKAWQKRGR-PLQIAVNIAAKQFTNPEFCDSVAKVLELTGLDSSFLELEVTESSL 696
            ++C AA+ W+++G    ++AVN++++QF  P+    +  +L LT L +S LELE+TE ++
Sbjct: 1231 KACFAAQKWREQGLFKGRVAVNLSSRQFALPDLQQRIESILRLTQLPASHLELEITEGTV 1290

Query: 697  MYDFDEALNVLNTLSSLGLSIAIDDFGTGYSSLSYLKFFPVNTLKIDQSFVKDMLGDEQS 756
            +   + A+ V+  L+ +G+S+A+DDFGTGYSSLSYLK FP++TLKID++FV D+   ++ 
Sbjct: 1291 IKQPEMAITVMQQLAKMGVSLALDDFGTGYSSLSYLKRFPIHTLKIDKAFVDDIDKSDRD 1350

Query: 757  LDIVKAVIHLAKSLKLKLIAEGIEDAEQLQKLVALECEQGQGYMFSKPLPLKEFDQLL 814
            L +V ++I +A ++ L ++ EG+E A QL  L AL CE+ QGY+FSK +   EF  LL
Sbjct: 1351 LKMVDSIITIAHNMGLSVVGEGVEQAAQLNILRALNCEEIQGYIFSKAINEAEFTLLL 1408