Pairwise Alignments

Query, 275 a.a., binding-protein-dependent transport systems inner membrane component (RefSeq) from Shewanella loihica PV-4

Subject, 256 a.a., spermidine/putrescine ABC transporter permease PotC from Vibrio cholerae E7946 ATCC 55056

 Score =  196 bits (498), Expect = 4e-55
 Identities = 104/263 (39%), Positives = 162/263 (61%), Gaps = 9/263 (3%)

Query: 6   RKLSFSTLMLWGGMFFLYAPMFILVFYSFNESKLVTVWGGFSAKWYGELFRDDQILDAVA 65
           R + FS + L     FLY P+ +L+  SFNE+K    WGGF+ KWY  L  +D ++ A  
Sbjct: 3   RSIRFSFMSLV--YLFLYLPIIVLIANSFNENKFGIKWGGFTTKWYHALMNNDSLMQAAW 60

Query: 66  TSLKVAFFASTMAVILGTMAAFVMTRFARSWGKMTLSNMITAPLVMPEVITGLSLLLLFV 125
            S+ VA F++T A ++G++ A  + R+    GK  +S M+   ++ P+++  +SLL LF+
Sbjct: 61  HSINVAVFSATAATLIGSLTAVALFRYQFK-GKKVVSGMLFVVMMSPDIVMAISLLALFL 119

Query: 126 HMADLLGWPAERGMLTVWIAHSTFCAAYVAVVVSSRLRELDMSIEEAAQDLGATPLKTFF 185
            M       A+ G  T+ IAH TFC  +V V V +RL   D+ + EAA+DLGA       
Sbjct: 120 VMG------AKLGFFTLLIAHITFCLPFVVVTVYTRLNGFDVKMLEAAKDLGAGEWVILK 173

Query: 186 HITVPMISPALIAGWLLSFSLSLDDLVIASFASGPGATTLPMVVFSSVRMGVSPKINALA 245
            I +P+  PA+ AGWLLSF+LSLDD++I+SF +GP    LP+ ++S V++G+SP++NALA
Sbjct: 174 KIILPLAKPAVAAGWLLSFTLSLDDVIISSFVTGPTYEILPLKIYSMVKVGISPEVNALA 233

Query: 246 TLIILIVSLIAFISWYLARRADK 268
           T+++++  ++   S  LAR   K
Sbjct: 234 TVMLVVSLVLVVASQLLAREKVK 256