Pairwise Alignments

Query, 432 a.a., DEAD/DEAH box helicase domain-containing protein (RefSeq) from Shewanella loihica PV-4

Subject, 535 a.a., ATP-dependent RNA helicase, DEAD box family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  363 bits (932), Expect = e-105
 Identities = 189/375 (50%), Positives = 259/375 (69%), Gaps = 1/375 (0%)

Query: 1   MRFESFSFAPEILHAISECGYQKMTPIQKEAIPAIRRGQDVLASAQTGTGKTAAFALPIL 60
           M F +   +  +  A+SE GY   +PIQ +AIPA+  G+DV+A+AQTGTGKTA F LP+L
Sbjct: 1   MSFSALGLSAPLQKAVSEQGYDTPSPIQAQAIPAVLTGKDVMAAAQTGTGKTAGFTLPLL 60

Query: 61  QKMFDSPSDTQRSNTRALILAPTRELVAQVADNIKQYSRYLPISVLTVYGGVKMDTQAAK 120
           + +       +   TRAL+L PTREL AQV ++++ Y +YLP+    V+GGV ++ Q  K
Sbjct: 61  E-LLAKGHKAKSGQTRALVLTPTRELAAQVGESVETYGKYLPLRSAVVFGGVPINPQINK 119

Query: 121 VKKGADIIVATPGRLLEHLQACNLNLSNVDFLVLDEADRMLDMGFITDIQKILQQVNRDR 180
           ++ G D++VATPGRLL+ +Q   +  + ++ LVLDEADRMLDMGFI DI+KIL  +   R
Sbjct: 120 LRHGVDVLVATPGRLLDLVQQNAVKFNQLEILVLDEADRMLDMGFIRDIKKILALLPAKR 179

Query: 181 QNLLFSATFSSAVKQLANEMLVKPKLIAVDKQNTTAVTVSQVVYPVEQRRKRELLSELIG 240
           QNL+FSATFS  +++LA  ++  P  I+V  +N  A TV Q + PV++ +K  LL +LI 
Sbjct: 180 QNLMFSATFSDEIRELAKGLVNHPVEISVTPRNAAATTVKQWICPVDKTQKSALLIQLIK 239

Query: 241 KKNWQQVLVFTATREAADVLVKELNLDGIPSAVVHSEKAQGNRRRALREFKEGKVRALVA 300
           ++NWQQVLVF+ T+  A+ L K L    I +A +H  K+QG R +AL +FK G+VR LVA
Sbjct: 240 QENWQQVLVFSRTKHGANRLAKSLIQAEISAAAIHGNKSQGARTKALADFKSGEVRVLVA 299

Query: 301 TEVAARGLDIPELEYVVNFDLPFLAEDYVHRIGRTGRAGRTGVAISLVSREEERTLADIE 360
           T++AARGLDI +L  VVNFDLP + EDYVHRIGRTGRAG TG A+SLVS EE + L DIE
Sbjct: 300 TDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGATGQAVSLVSSEEIKLLKDIE 359

Query: 361 KLIGNKIRRITIPGY 375
           +LI   + R  + G+
Sbjct: 360 RLINRVLERQEVEGF 374