Pairwise Alignments

Query, 572 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

Subject, 770 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

 Score =  227 bits (579), Expect = 1e-63
 Identities = 161/439 (36%), Positives = 245/439 (55%), Gaps = 16/439 (3%)

Query: 105 MHNHPLSFHIDASRASIKTLHDIIDNQILASDLADDERAEVNRLVSLLDKVTQEGFNPAI 164
           M + P     DAS A I TL+ +  ++   + +   + A     + LL KV+ +  + A+
Sbjct: 311 MRSQPRLLLEDAS-AFIGTLNSLTGDRAAINQIRSKQSA-----IGLL-KVSSQAVDKAL 363

Query: 165 QALS--QGEYKRSNQLLLEKINPLFKDITDQAQAFL-DMQIAEAKTSY-QASQETVSLYI 220
           +  S    E   ++  LL    PL  D      A + +MQ  EA     + S E +   +
Sbjct: 364 RGESGLMMESTHASVQLLSAYTPL--DALGLRWALVTEMQADEALADIAKLSDELIMKVL 421

Query: 221 WLVAIFSGVAMLAISVSSVFIIRRVSLSVVQLEETAVDIAAGDLTKRIRLGGHDEFAHIA 280
             + I + +A LA  +    I + +  S+ Q++  + D    DLT R+   G DE   +A
Sbjct: 422 IAIVIGAVIATLAAWMVGNGISKPIRDSISQIQRMSRD---NDLTVRLSEQGSDEIRQLA 478

Query: 281 EHVNRIASDFQQAVTNTHASTSRLASAAEENAVVSTQTQRNVLDQQQQTQLIATAIHEFT 340
           + +NR+ S  Q  +     +T +L S  +      T T+ +V +Q ++T  + TA++E +
Sbjct: 479 QALNRMLSHLQDTICQFAHTTDKLNSHTQTITHNMTGTRNSVSEQHERTDSVVTAVNEMS 538

Query: 341 ATVREVAQSAASAATASQDANGAAHGAQGVVDESIAVIEALAQELSRASEAMTLLAQHSN 400
           A++ EV++ A  AAT  Q+AN   HG   V +E    + ++ Q+++ A EA+  L   S 
Sbjct: 539 ASITEVSEFAQRAATFVQEANQKGHGGVSVGNELARDMTSINQQMASAVEAIARLNHESQ 598

Query: 401 EIGTVVDVIQAISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLAKRTQDSTEEIQK 460
            I +V+DVIQAI+EQTNLLALNAAIEAARAGEQGRGFAVVADEVR+LA +TQ STEEI+ 
Sbjct: 599 SIASVLDVIQAIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLAAKTQTSTEEIRT 658

Query: 461 MIQRLQQGARDSMQMMQSGTEQVKLSVDKSLMVRDALQQILNSIEEINALNAQIATASEE 520
            I RLQ+  +  +  ++     V   V       D L+QI++ + E+N +N QIATA+E+
Sbjct: 659 KIDRLQKETQSVVNCIEEANNTVVRGVATCHSNTDMLKQIVDMLNELNEMNIQIATATEQ 718

Query: 521 QSSVTEEININITNISEIS 539
           Q  VTEEIN NIT+IS++S
Sbjct: 719 QRGVTEEINANITSISDVS 737