Pairwise Alignments

Query, 572 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

Subject, 643 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

 Score =  227 bits (578), Expect = 1e-63
 Identities = 136/406 (33%), Positives = 235/406 (57%), Gaps = 22/406 (5%)

Query: 170 GEYKRSNQLLLEKINPLFKDITDQAQAFLDMQIAEAKTSYQASQETVSLYIWLVAIFSGV 229
           G YKR N  L + +        D+A A  D+ +A A                  AI +G+
Sbjct: 256 GYYKRVN--LTDDMYWTLMVFVDKATALADVDVAVAN-----------------AITTGI 296

Query: 230 AMLAISVSSV-FIIRRVSLSVVQLEETAVDIA--AGDLTKRIRLGGHDEFAHIAEHVNRI 286
            ++ ISV  + FII ++   +++L+   +D+A  +GDLT+R+ + G+D+ A I+E  NR 
Sbjct: 297 VLIGISVGVIIFIINQIYKPLLRLKVAVLDLAQGSGDLTRRLEVNGNDDLAQISEGFNRF 356

Query: 287 ASDFQQAVTNTHASTSRLASAAEENAVVSTQTQRNVLDQQQQTQLIATAIHEFTATVREV 346
           + + Q  +     +T  ++S+ E+ +  + + ++ ++    +T  + TAI + + + R V
Sbjct: 357 SGNLQNMMLQISDATQIISSSIEQLSQTAKENEQMLISHSSETDQVVTAITQMSESARTV 416

Query: 347 AQSAASAATASQDANGAAHGAQGVVDESIAVIEALAQELSRASEAMTLLAQHSNEIGTVV 406
           A+S   +   ++ A+  A  +  +V+ +++ + +L  ++   SE+++ + + +N+I  V+
Sbjct: 417 AESVTQSNQITEAASKEAQQSLVIVNNAVSTVTSLVNDVENMSESISNMNRDANKISEVL 476

Query: 407 DVIQAISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLAKRTQDSTEEIQKMIQRLQ 466
            VI AISEQTNLLALNAAIEAARAGEQGRGFAVVADEVR+LA RTQ+ST EI  M+ +L 
Sbjct: 477 SVIGAISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALAARTQNSTTEISDMLTKLL 536

Query: 467 QGARDSMQMMQSGTEQVKLSVDKSLMVRDALQQILNSIEEINALNAQIATASEEQSSVTE 526
           +G    +  M+   +Q + + DK+  V  +L  +  S+ +I+ L+ QIA A+E+QS+V  
Sbjct: 537 EGTDSVVGAMERTKQQCQTTADKTSEVSGSLNMMSASVSDIDDLSTQIAAATEQQSTVAA 596

Query: 527 EININITNISEISDQTAEGARQSSDATEDLARLAESMEADIAHYKV 572
           E++ N+ +I EI +      RQ+  ATE L+     +E  +  +K+
Sbjct: 597 ELSRNMLSIREIVESLVVSGRQTVGATESLSHSNHELEQLVGKFKL 642