Pairwise Alignments

Query, 572 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

Subject, 596 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

 Score =  558 bits (1439), Expect = e-163
 Identities = 294/570 (51%), Positives = 413/570 (72%), Gaps = 5/570 (0%)

Query: 1   MSEHKRQEAHEMTAASTQGSGLMERIKSVRFQLKLNIFLIIFAFIFLGYKGITGMLDAGY 60
           M  ++   AH    A T  S     + SV  +LKL + LI+ + +FLG+KG+TGM  A  
Sbjct: 30  MVSNQHNNAHRTIIAGTTNS-----LHSVGLRLKLIVVLIVVSILFLGFKGLTGMQSASD 84

Query: 61  AIGDLYGQGMQHSIRAGKVLNELEKARSGLLLGFQHDPANAFADMHNHPLSFHIDASRAS 120
           +I  LY +GMQH+IRAG++L+EL  ARS LLL FQHDP++ +A MH+HP++ H++  + S
Sbjct: 85  SIESLYTKGMQHTIRAGRILDELGSARSQLLLAFQHDPSSKYALMHDHPITMHVEGIQTS 144

Query: 121 IKTLHDIIDNQILASDLADDERAEVNRLVSLLDKVTQEGFNPAIQALSQGEYKRSNQLLL 180
           +  LH I+DN+ILA+ L   E+A +  L   LD+VT++GF PA+Q L   +Y  +N +LL
Sbjct: 145 LTNLHRIVDNEILATVLDVQEKAVIQTLKEKLDQVTRQGFEPALQQLKAEKYDAANLILL 204

Query: 181 EKINPLFKDITDQAQAFLDMQIAEAKTSYQASQETVSLYIWLVAIFSGVAMLAISVSSVF 240
           + INPL+ +I   A+AFLD+Q  E K ++ ASQ  ++ +IW+V++    A++  +  ++ 
Sbjct: 205 QVINPLYNEIKKAAEAFLDIQTQEGKNNFSASQHEINQFIWMVSLLGAFALIVTTSLALL 264

Query: 241 IIRRVSLSVVQLEETAVDIAAGDLTKRIRLGGHDEFAHIAEHVNRIASDFQQAVTNTHAS 300
           I +RV+ +V  L  +A  IAAGDLT+RI + G+DEF+ IA++VNRI + FQ+ +++   S
Sbjct: 265 IAKRVNNAVHHLASSATHIAAGDLTQRIPVTGNDEFSDIAKYVNRIVTSFQEVISSNRHS 324

Query: 301 TSRLASAAEENAVVSTQTQRNVLDQQQQTQLIATAIHEFTATVREVAQSAASAATASQDA 360
            S LA+AAEENA V+ QT++N+++QQ QTQ IA AIH+FTATV EVAQSA  AA AS++A
Sbjct: 325 VSALATAAEENAAVAMQTKQNIVEQQSQTQQIAAAIHQFTATVHEVAQSAGLAAEASEEA 384

Query: 361 NGAAHGAQGVVDESIAVIEALAQELSRASEAMTLLAQHSNEIGTVVDVIQAISEQTNLLA 420
             AA   + VV+E+IA+IE L+ +L +   AM LLA+ S +IG+VVDVIQ+ISEQTNLLA
Sbjct: 385 EQAAMQGRKVVEENIAMIEGLSNDLQKMLAAMQLLAKDSEDIGSVVDVIQSISEQTNLLA 444

Query: 421 LNAAIEAARAGEQGRGFAVVADEVRSLAKRTQDSTEEIQKMIQRLQQGARDSMQMMQSGT 480
           LNAAIEAARAGEQGRGFAVVADEVR+LA RTQ+ST++I + +QRLQQ +RDS  +++ G 
Sbjct: 445 LNAAIEAARAGEQGRGFAVVADEVRTLASRTQESTKQILQTVQRLQQSSRDSANLIEQGV 504

Query: 481 EQVKLSVDKSLMVRDALQQILNSIEEINALNAQIATASEEQSSVTEEININITNISEISD 540
                +V+K+ +   AL QI  +++ I+ +N QIATASEEQS+VTEEIN NI  ISEIS+
Sbjct: 505 SGASKAVEKARLAGTALSQITANVDRISTMNTQIATASEEQSAVTEEINKNIITISEISN 564

Query: 541 QTAEGARQSSDATEDLARLAESMEADIAHY 570
           QTA GA+QSS+AT +LARLAESM+ ++A Y
Sbjct: 565 QTALGAQQSSEATLELARLAESMQQEVARY 594